Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1279 ATGGATTCAGTGGAGGCTATCGAGGAGTTGGCTCAGTTGTCGGACTCCATGCGGCAAGCTGCCGCTTTGCTTGCCGACGAGGACATTGATGAAACCTCCACCTCCGGAGCTTCCTCTCGCAGGCCTTCCACTTTCCTCAACGTCGTTGCCTTGGGGAATGTGGGAGCTGGTAAATCTGCAGTTTTAAATAGCTTGATTGGACATCCTGTTTTGCCAACTGGGGAAAATGGTGCTACTAGGGCTCCCATAAGCATTGACTTACAAAGGGATGGCTCATTGAGCAGCAAATCAATTATCTTGCAAATTGACAATAAGTCTCAGCAAGTTTCTGCAAGTGCTTTGCGACATTCTCTGCAGGACAGATTGAGTAAAGGTTCATCTGGCAAGAGCCGAGATGAAATCTATTTGAAGCTTCGCACTAGTACAGCGCCTCCGTTGAAATTGATTGATTTACCTGGGCTTGATCAGCGGAGCGTGAGTGAATCAATGATTAGTGAATATGCTGAGCACAATGATGCCATTTTACTAGTCATTGTGCCTGCCTCTCAAGCAGCTGATATTGCTTCAAGTCGTGCCCTCAGACTGGTAAAGGATTATGACGGTGAAGGAACTAGAACTATTGGGATAATTAGCAAAATGGATCAAGCTGCTTCAGATCAGAAATCTCTGGCTGCTGTTCAGGCTTTATTATTAAATCAAGGACCATCAAGAGCTTCAGATATACCTTGGGTTGCTTTAATTGGTCAATCTGTTTCAATTGCTACTGCAGCGTCTGGTTCTGTTGGCTCTGAAAATTCTTTGGAAACTGCTTGGAGGGCCGAGAGCGAAAGTCTGAAATCCATACTGACTGGTGCCCCTCAGAGTAAACTGGGTAGAATTGCTTTGGTGGATGCTTTAGCTCATCAAATACGGAACCGTATGAAAGTCAGACTTCCAAACCTCTTATCAGGGTTACAAGGAAAGTCTCAGATTGTTCAAGATGAATTATCGAAACTTGGTGACCAAATGGGGGAAAGTGCTGAAGGGACAAGAGCTGTAGCCTTGCAACTCTGCCGTGAATTTGAAGATAAGTTTCTTCAGCACATTGCAACCGGTGAGGGCGCTGGTTGGAAAATTGTTGCTAGTTTTGAGGGAAACTTTCCAAACAGAATCAAGCAGCTCCCTCTAGACAGACATTTTGACATTAACAATGTGAAGAGGATTGTGTTAGAAGCCGATGGTTATCAACCATATTTGATATCCCCTGAAAAGGGTTTGCGATCTCTAATTAAAGGTGTTTTAGAGCTTGCAAAAGAACCATCTCGTCTATGTGTCGATGAGGTCCATCGCGTTCTAGTGGATATAGTTTCTGCCGCTGCAAATTCTACACCAGGTCTTGGAAGATACCCACCTTTCAAGAGAGAGATCGTGGCTATCGCAAGTGCTGCATTAGATGGATTTAAGAATGAAGCGAAGAAAATGGTAGTTGCACTTGTTGACATGGAGCGAGCTTTTGTGCCTCCTCAACATTTTATTCGATTGGTACAAAGGAGGATGGAGAGGCAGCGTCGAGAGGAGGAGGTGAAACATAAATCATCAAAGAAAGGTCAAGAGGCAGAGCAATCAATATTAAACAGGGCAACTAGTCCTCAAACCAGTGGTCAACAAAGTAGTGGAAGCCTGAAATCAATGAAGGATAAACCAGGCAAAGAGGACAAAGAAGTACAGGAAACTTCTGGTTTAAAGACTGCAGGTCCAGAAGGGGAAATAACAGCAGGCCGAATTCAAAATCTGAAGAATGGATTGGTGGATGTTGAAGGATTACATGGCTGGAATATTGGGAATGTGGTTCTTGGTGAAGGTTTTCTGTTAAAGAAAAGCGCCAAAACAAGTGGATGGAGTAAAAGATGGTTTGTTCTAAATGAGAAGACCGGAAAGCTTGGTTACACTAAGAAGCAAGAGGAGAGACATTTCCGTGGTGTGATCACTTTGGAGGAATGTAATGTCGAGGAGGCTTCAGATGAGGAAGAAGCTCCTTCTAAGGGTTCAAAGGATAAGAAAGCTAATGGACCAGATTCTGGAAAAGGTCTCGTGTTCAAGATCACGAGCAAGGTTGCATATAAAACCGTTCTTAAAGCACACAACGCTGTTGTCTTGAAGGCTGAAAGTATGGCTGACAAGGTCGAATGGATGAATAAGATACGAAATGTTATTCAACCTTCCAGAGGGCAGATGAAGGGTCCAGAAAGTGGTCTTCCTATGCGGCAGAGTTTTTCAGATGGCTCTCTTGATACAATGAATAGAAAACCTGTCGATCCTGAAGAGGAACTACGATGGATGTCCCAAGAAGTTCGCGGCTATGTTGAAGCTGTCTTGAACAGTTTAGCTGCCAATGTTCCAAAAGCAGTTGTACTTTGCCAAGTTGAGAAAGCCAAGGAAGATATGCTAAATCAGTTGTATAGTTCCATCAGTGCTCAAAGCACACCAAGGATAGAGGAGCTACTTCTCGAGGATCACAATGTAAAGAATAAGAGAGAGCGCTGCCAAAAACAATCATCTCTTCTTTCTAAATTACTGCGTCAACTCAGTGTACATGACAACCGAGCGGCTGCTGCAGCCAACTGGTCGGACAGTGGGGCAGTCTTCTCATATTCATATGTTTCTACCATGTCCAATACCGGGGAGAACACTAGATTTACCTTTGGAACCTGGAAAGAAGGTTGGCGTGTACATAGAGATCAAAGTTCCATTAGCTTCCAGAGGTCGACTTTGCCCCGTGCTACGATATTCAACTCGAAAAAGTATCCTTGA 2790 44.09 MDSVEAIEELAQLSDSMRQAAALLADEDIDETSTSGASSRRPSTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDGSLSSKSIILQIDNKSQQVSASALRHSLQDRLSKGSSGKSRDEIYLKLRTSTAPPLKLIDLPGLDQRSVSESMISEYAEHNDAILLVIVPASQAADIASSRALRLVKDYDGEGTRTIGIISKMDQAASDQKSLAAVQALLLNQGPSRASDIPWVALIGQSVSIATAASGSVGSENSLETAWRAESESLKSILTGAPQSKLGRIALVDALAHQIRNRMKVRLPNLLSGLQGKSQIVQDELSKLGDQMGESAEGTRAVALQLCREFEDKFLQHIATGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDIVSAAANSTPGLGRYPPFKREIVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKHKSSKKGQEAEQSILNRATSPQTSGQQSSGSLKSMKDKPGKEDKEVQETSGLKTAGPEGEITAGRIQNLKNGLVDVEGLHGWNIGNVVLGEGFLLKKSAKTSGWSKRWFVLNEKTGKLGYTKKQEERHFRGVITLEECNVEEASDEEEAPSKGSKDKKANGPDSGKGLVFKITSKVAYKTVLKAHNAVVLKAESMADKVEWMNKIRNVIQPSRGQMKGPESGLPMRQSFSDGSLDTMNRKPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTPRIEELLLEDHNVKNKRERCQKQSSLLSKLLRQLSVHDNRAAAAANWSDSGAVFSYSYVSTMSNTGENTRFTFGTWKEGWRVHRDQSSISFQRSTLPRATIFNSKKYP 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11551908 11564400 + CrPI670011_11g012790.1 Cre11g1279 513024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1279 929 MobiDBLite consensus disorder prediction 667 684 - -
Cre11g1279 929 FunFam Dynamin-2A 338 545 - -
Cre11g1279 929 Gene3D - 604 736 IPR011993 -
Cre11g1279 929 FunFam Dynamin-2A 728 838 - -
Cre11g1279 929 Pfam Dynamin GTPase effector domain 768 853 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre11g1279 929 Pfam Dynamin family 48 212 IPR045063 -
Cre11g1279 929 PANTHER DYNAMIN 31 855 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Cre11g1279 929 SMART GED_2 765 858 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre11g1279 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 321 IPR027417 -
Cre11g1279 929 MobiDBLite consensus disorder prediction 516 581 - -
Cre11g1279 929 SMART PH_update 610 734 IPR001849 -
Cre11g1279 929 MobiDBLite consensus disorder prediction 557 571 - -
Cre11g1279 929 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 71 80 IPR019762 -
Cre11g1279 929 Gene3D Dynamin, middle domain 338 542 - -
Cre11g1279 929 SMART dynamin_3 7 254 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre11g1279 929 SUPERFAMILY PH domain-like 610 732 - -
Cre11g1279 929 CDD DLP_1 48 312 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre11g1279 929 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 42 312 IPR030381 GO:0005525(InterPro)
Cre11g1279 929 FunFam Dynamin-2B isoform A 44 327 - -
Cre11g1279 929 PRINTS Dynamin signature 201 217 IPR022812 -
Cre11g1279 929 PRINTS Dynamin signature 182 200 IPR022812 -
Cre11g1279 929 PRINTS Dynamin signature 45 63 IPR022812 -
Cre11g1279 929 PRINTS Dynamin signature 70 87 IPR022812 -
Cre11g1279 929 ProSiteProfiles GED domain profile. 770 863 IPR020850 -
Cre11g1279 929 Gene3D - 44 327 IPR027417 -
Cre11g1279 929 Pfam Dynamin central region 265 503 IPR000375 -
Cre11g1279 929 MobiDBLite consensus disorder prediction 516 530 - -
Cre11g1279 929 ProSiteProfiles PH domain profile. 609 732 IPR001849 -
Cre11g1279 929 MobiDBLite consensus disorder prediction 531 556 - -
Cre11g1279 929 MobiDBLite consensus disorder prediction 663 686 - -
Cre11g1279 929 FunFam Dynamin-2A 603 736 - -
Cre11g1279 929 Pfam PH domain 613 731 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1279 K01528 - - csv:101220030 1509.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0132 Cre-Chr8:2821993 Cre11g1279 Cre-Chr11:11551908 0.00E+00 dispersed
Cre09g1872 Cre-Chr9:37299375 Cre11g1279 Cre-Chr11:11551908 2.60E-56 dispersed
Cre11g1279 Cre-Chr11:11551908 Cre05g0372 Cre-Chr5:3393828 2.10E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69