Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1284 ATGAACCCTTCTCTTTTCTTCCTTCCTTTTTCCCTTCTTTTCTTCATCTTCAACCTCGCCTCCGCCTGTAATCTCGCTGATCAGAACGCTCTTCTTGCTTTCAAATCCGCCATTACTGCCGACCCCTCCGGCATTTTAACCTCATGGAAATCCGGCGTCGACTGCTGCACTTGGGCCGGAGTCACTTGCTCCATCCCCAATCGAGTCACCAGTCTCAGCCTCTACGGCCAACTCGACCGCCCCAACGCCTTCCTCTCCGGCACCATCTCCGCCTCTCTCTCCAACCTCCCTTACTTGGACGGAATCTACCTCGTCAATCTTCGAAACATTTCAGGCCCTTTTCCAACTTCACTCTTCAAACTCCCCAAACTCCTCTTCGTCTACATCGAGAACAACAAGCTTTCAGGTCAATTACCCGCCGCCATCGGAAATATGAGCCAACTAGAAGCACTCAGTCTTGAAGGTAACAGATTCACTGGTCCGATCCCGAGTTCAATTTCCAAATTGACTCGCCTGACTCAGCTTAAACTCGGTAGCAATCTTCTCACTGGATCCATTCCGATTGGAATCCAGCAACTCAAAAGTCTGACGTTCCTCAGCCTCGAACGGAATCGATTCACCGGTCCCGTTCCGGATTTTTGGGGATCATTTCCGGAGTTGAGGATTCTCAGACTTTCTCACAATAAACTCACCGGCAAAATTCCGCGCTCAATTTCAGCTCTGGCTGCGAAGCTTAATTACTTGGAGTTGGGGCACAATTTGATAACAGGTAATATCCCTGAATTTCTCGGAAATTTTAGGGCTCTTGATACTCTCGATCTCTCCTCCAATTTCATCTCTGGAGTTGTGCCGAAGAGCTTCAGGAATTTGACGAAGATATTCAACCTGGATCTATCTCGGAATTCACTGGTGGATCCGTTCCCGGAGTTGTTGGTCAAAGGGATCGAGTCGCTGGATTTGTCGTACAACAAATTTCATCTCGGGAAAATTCCGAAATGGGTGACGTCGTCGCCGATAATATACTCTCTGAAATTGGCCAAATGTGGGATCAAGATGAAGCTGGACGATTGGAAGCCGAGCGAAACGTATTTCTACGATTACATTGATTTATCGGAGAACGAGATTTGGGGCAGTCCGGTGAATTTGTTGAACCGGACGGATTATTTGGTCGGATTTTGGGGAGCCGGAAACAAGTTGAATTTCAAGCTGCAAGATTTGAGGATAGTGAAGAGGTTGAAGTATTTGGATTTGTCGAGAAATTTGGTGTCCGGTAAAGTACCCGGCGGCGTGGTGGGGCTGGAAAAGTTGAACGTCAGCTACAATCATTTGTGCGGCCGGCTTCCGGCGACGAAGTTCCCGGCGGCGTCGTTTTTGGGAAATGATTGCTTGTGTGGGGCGCCGCTGCCGTCCTGCAAATGA 1419 48.84 MNPSLFFLPFSLLFFIFNLASACNLADQNALLAFKSAITADPSGILTSWKSGVDCCTWAGVTCSIPNRVTSLSLYGQLDRPNAFLSGTISASLSNLPYLDGIYLVNLRNISGPFPTSLFKLPKLLFVYIENNKLSGQLPAAIGNMSQLEALSLEGNRFTGPIPSSISKLTRLTQLKLGSNLLTGSIPIGIQQLKSLTFLSLERNRFTGPVPDFWGSFPELRILRLSHNKLTGKIPRSISALAAKLNYLELGHNLITGNIPEFLGNFRALDTLDLSSNFISGVVPKSFRNLTKIFNLDLSRNSLVDPFPELLVKGIESLDLSYNKFHLGKIPKWVTSSPIIYSLKLAKCGIKMKLDDWKPSETYFYDYIDLSENEIWGSPVNLLNRTDYLVGFWGAGNKLNFKLQDLRIVKRLKYLDLSRNLVSGKVPGGVVGLEKLNVSYNHLCGRLPATKFPAASFLGNDCLCGAPLPSCK 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11645747 11647165 + CrPI670011_11g012840.1 Cre11g1284 513029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1284 472 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 55 314 - -
Cre11g1284 472 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Cre11g1284 472 SMART LRR_typ_2 193 215 IPR003591 -
Cre11g1284 472 SMART LRR_typ_2 217 241 IPR003591 -
Cre11g1284 472 SMART LRR_typ_2 430 459 IPR003591 -
Cre11g1284 472 SMART LRR_typ_2 169 192 IPR003591 -
Cre11g1284 472 SMART LRR_typ_2 121 145 IPR003591 -
Cre11g1284 472 SMART LRR_typ_2 266 289 IPR003591 -
Cre11g1284 472 SUPERFAMILY L domain-like 53 427 - -
Cre11g1284 472 Gene3D Ribonuclease Inhibitor 198 472 IPR032675 -
Cre11g1284 472 Gene3D Ribonuclease Inhibitor 25 189 IPR032675 -
Cre11g1284 472 PANTHER POLYGALACTURONASE INHIBITOR 1 191 471 IPR051848 -
Cre11g1284 472 Pfam Leucine rich repeat 244 303 IPR001611 GO:0005515(InterPro)
Cre11g1284 472 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515(InterPro)
Cre11g1284 472 Pfam Leucine Rich Repeat 195 216 IPR001611 GO:0005515(InterPro)
Cre11g1284 472 Pfam Leucine Rich Repeat 315 334 IPR001611 GO:0005515(InterPro)
Cre11g1284 472 Pfam Leucine Rich Repeat 220 241 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1284 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1833 Cre-Chr10:32892441 Cre11g1284 Cre-Chr11:11645747 2.00E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1691 . . . . . . . . . . . . . . Sed05g2505 . . Bhi04g02557 Tan11g0037 Cmetu03g0795 . Hepe02g3470 . Lcy10g2364 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00803 Cam11g0839 Cec11g0825 . Clacu11g1018 Cmu11g0881 Cre11g1284 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012402 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 0 1 1 26