Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1319 ATGGGTAATCCCATTAAGGTTTACGGTGTCGCGGTTGTTGTTGTGGGAATGGTGTTGTTTGATGTAAGTGTTGCCCAATTTGAAGGAGGTGGAAACAGTCCCTTCAGAGATGGCGACGGCAGCGGCGGGAGACGGGTGGAGATGGTACCGGCTATGTTTGTATTCGGAGACTCTCTCATTGACAATGGAAATAACAATAATCTTCCCTCTTTTGCCAAGGCCAACTATTTCCCCTATGGCATTGATTTCAATGGCGGCCCAACTGGGCGCTTCTCCAATGGCTACACCATGGTCGATGAAATAGCGGAGCTGCTAGGACTCCCATTAATCCCAGCCTTCTCTCAAGTTTCTGGAGCCCAATCTCTGCATGGAGTCAACTATGCATCCGCTGCGGCCGGGATTCTTGACGCCACGGGGAGAAACTTTGTGAGTCGCATACCTTTCAATCAACAAATCAGAAACTTCGAGAACACGCTGGATGAGATTAGTAACAATGTAGGGGCAGGGAAGGTGGGAGAATCCATGGGACGGTGCATATTCTTTGTGGGAATGGGAAGCAACGACTACCTCAATAACTATCTTATGCCAAATTACCCCACTCGAAATCAGTACAATGCTGAACAGTACGCGGAGTTGTTGGTCAGCCAATATACGGAGCAGCTCACTAGGCTGTACAATCTAGGAGGTAGAAGGTTTGCGATAGCAGGTTTAGGGCTGATGGGTTGCATTCCAAGCATCCTAGCACAGAGCCCATCGGGAAGGTGCTCAGAAGAAGTGAACCAACTTGTTGGACCATTCAATATGAATGTGAAGAGAATGATAAAGCAGCTGAATACCAATCTTCCAGGAGCAAGATATAGTTACATTGACATAGAACACATGTTCCAAGACTTGCTTCTCAATTCTAGATTTTATGGTTTAAGTGTTTTGAATAGAGGATGCTGTGGAATTGGGAGGAACAGAGGCCAAATCACTTGCCTTCCCTTCCAAACTCCTTGTAGTAATCGAGATGAGTACATCTTTTGGGATGCATTCCATCCTACTGAAGCAGTTAACATTATCATGGCTAGGAAGGCTTTTAATGGTGACCAATCTGTTATTTTCCCTTTCAATATCCAACAGCTAGCTACTACTCTTTGA 1140 45.79 MGNPIKVYGVAVVVVGMVLFDVSVAQFEGGGNSPFRDGDGSGGRRVEMVPAMFVFGDSLIDNGNNNNLPSFAKANYFPYGIDFNGGPTGRFSNGYTMVDEIAELLGLPLIPAFSQVSGAQSLHGVNYASAAAGILDATGRNFVSRIPFNQQIRNFENTLDEISNNVGAGKVGESMGRCIFFVGMGSNDYLNNYLMPNYPTRNQYNAEQYAELLVSQYTEQLTRLYNLGGRRFAIAGLGLMGCIPSILAQSPSGRCSEEVNQLVGPFNMNVKRMIKQLNTNLPGARYSYIDIEHMFQDLLLNSRFYGLSVLNRGCCGIGRNRGQITCLPFQTPCSNRDEYIFWDAFHPTEAVNIIMARKAFNGDQSVIFPFNIQQLATTL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12861832 12863210 + CrPI670011_11g013190.1 Cre11g1319 513064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1319 379 SUPERFAMILY SGNH hydrolase 178 359 - -
Cre11g1319 379 CDD SGNH_plant_lipase_like 50 363 IPR035669 -
Cre11g1319 379 Pfam GDSL-like Lipase/Acylhydrolase 53 357 IPR001087 GO:0016788(InterPro)
Cre11g1319 379 Gene3D SGNH hydrolase 45 364 IPR036514 -
Cre11g1319 379 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 47 376 IPR051238 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1319 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2481 Cre-Chr6:32581670 Cre11g1319 Cre-Chr11:12861832 1.90E-60 dispersed
Cre08g0059 Cre-Chr8:1375246 Cre11g1319 Cre-Chr11:12861832 1.00E-148 dispersed
Cre08g0060 Cre-Chr8:1391429 Cre11g1319 Cre-Chr11:12861832 9.70E-91 dispersed
Cre09g2361 Cre-Chr9:42870686 Cre11g1319 Cre-Chr11:12861832 1.10E-61 dispersed
Cre10g0732 Cre-Chr10:7078256 Cre11g1319 Cre-Chr11:12861832 3.10E-57 dispersed
Cre10g0734 Cre-Chr10:7119662 Cre11g1319 Cre-Chr11:12861832 2.90E-55 dispersed
Cre11g1319 Cre-Chr11:12861832 Cre11g1370 Cre-Chr11:16912403 1.10E-60 dispersed
Cre11g1319 Cre-Chr11:12861832 Cre03g0994 Cre-Chr3:8754295 1.70E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1661 . . . . . . . Bma01g02439 . . . . Car01g00778 . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00039 . . . . . . . . . . . . . . . . Cpe02g01018 . . . . . . . Cla11g00844 Cam11g0875 Cec11g0875 Cco11g0870 Clacu11g0987 Cmu11g0838 Cre11g1319 Lsi08g00048 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61