Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1337 ATGGGGCTATTGATAAGTTGCTCTTGGTTCTACATCGGCTTCAAGAGATGGAAGCTCATAAAACTCAGAGAATATTTCTTCCGACAAAATGGAGGATTAATGTTTGAGCAACAACTTTCCATCCGAGACGACGCCGCACAAACCGCTAAACTTTTCACAGCTGAGGAATTACGGAAAGCCACTAACAACTACTCTGACGACCGAATCGTCGGCAAAGGCGGCTTCGGAACAGTCTACAAAGGCATCCTCCCTACCGGCGCCGCCGTCGCCATCAAGAAATCCAAGATCGTCGATAAAACTCAGAACAAACAGTTCATCAACGAAGTCATTGTCCTCTCACAGATCAATCATCGAAACACAGTCAAACTCTTAGGCTGTTGCTTGGAAGAAGAAGTTCCTCTTCTCGTCTACGAATTCGTCTCCAATGGCACGCTCTTCGATCACATTCACAAGAGAAAATCACAGCGCTCTATTCCTTGGAAGATCCGCCTCAAAATCGCATCCGAAACCGCCGGAGTCCTCTCCTATCTTCACTCCTCCGCCACTATTCCGATCATTCACAGAGATGTCAAATCCACAAACATTCTCCTCGACGAAAATTTCACTGCGAAGGTCTCCGATTTTGGTGCTTCCAAACTAGTTCCTTTAGATCAGGTCGATTTGAGCACGATCGTGCAAGGAACTCTGGGATACCTAGATCCAGAGTATTTGCAAACTAGTCAATTGACGGAGAAGAGTGACGTGTACAGTTTCGGCGTTGTTTTGGTCGAATTGATGACCGGAAAAGCTCCTCTGTCCTTCAGCCGATCGGAGGACGAACGGAATCTATCAATGCATTTTCTAATCGCTCTGAAGCAGAATCGGCTTGGAGAAATTGTGGATAGAAGTTTAGGCGGCGATGTGGATGTGGAGCAACTGAAGGAAGTTGCGAGCCTTGCGAAGAGGTGTTTGAGAGTGAAGGGAGAAGAAAGGCCGACGATGAAGGAGGTTGCTGCAGAGCTTGAAGGATTATGTCAAATGGCGTTCGGTCATCCATGGAATGTTGATAAATCTTCGTCTGTTGAAGGAGGAGAGCTTTTGGTTAATGAAGAAGATAAAAATGAAGTTCCATTTGATAGTTTGCTTTTCCCCATCAACCAAATGATGCCAAACGCACGTTCTGCCAGGTAA 1170 46.07 MGLLISCSWFYIGFKRWKLIKLREYFFRQNGGLMFEQQLSIRDDAAQTAKLFTAEELRKATNNYSDDRIVGKGGFGTVYKGILPTGAAVAIKKSKIVDKTQNKQFINEVIVLSQINHRNTVKLLGCCLEEEVPLLVYEFVSNGTLFDHIHKRKSQRSIPWKIRLKIASETAGVLSYLHSSATIPIIHRDVKSTNILLDENFTAKVSDFGASKLVPLDQVDLSTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELMTGKAPLSFSRSEDERNLSMHFLIALKQNRLGEIVDRSLGGDVDVEQLKEVASLAKRCLRVKGEERPTMKEVAAELEGLCQMAFGHPWNVDKSSSVEGGELLVNEEDKNEVPFDSLLFPINQMMPNARSAR 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14037115 14038284 - CrPI670011_11g013370.1 Cre11g1337 513082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1337 389 FunFam Wall-associated receptor kinase 2 140 356 - -
Cre11g1337 389 Gene3D Phosphorylase Kinase; domain 1 33 139 - -
Cre11g1337 389 FunFam Wall-associated receptor kinase 2 34 139 - -
Cre11g1337 389 ProSiteProfiles Protein kinase domain profile. 64 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1337 389 SMART serkin_6 64 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1337 389 CDD STKc_IRAK 70 337 - -
Cre11g1337 389 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524(InterPro)
Cre11g1337 389 Pfam Protein kinase domain 64 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1337 389 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 4 338 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Cre11g1337 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1337 389 Gene3D Transferase(Phosphotransferase) domain 1 140 341 - -
Cre11g1337 389 SUPERFAMILY Protein kinase-like (PK-like) 48 336 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0579 Cre-Chr8:18668640 Cre11g1337 Cre-Chr11:14037115 4.20E-98 dispersed
Cre11g1145 Cre-Chr11:9056123 Cre11g1337 Cre-Chr11:14037115 9.30E-78 dispersed
Cre11g1337 Cre-Chr11:14037115 Cre11g1753 Cre-Chr11:29171287 7.30E-65 dispersed
Cre11g1337 Cre-Chr11:14037115 Cre11g2308 Cre-Chr11:34672809 1.10E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64552 PF00069 Pkinase 2.70E-51 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1337 - - - 0.0