Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1355 ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTCTCCCCTCAACACCAACCCTCCGACCACCCTCCTGCCGCCGCCCCCTTCACCTCCGACCAAATCTCCCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCATATGGTGTTTATGAACCCTTCAACCGCAATAATCATTCTCAAGATTGGAATAGTATGAAGGGTTTAGGGTCGACTCAAAGTTCGGATTTTTCTGCTTTAATCGAAACCCAACACCAACCAAAGCTTGAAAATTTCCTCGGTCACCACTCTTTCACCGACCACGACCACGCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGGCTGGCGGCGGCGGCGGCGGTGGAAGACCCAACGCCGGTAACGGAAACACCAACAACACTAGCTCTATTGGGTTATCTATGATTAAGACATGGCTAAGAAATCAACCGGCGCCGCCGCAAGCGGTGACCAAGAGTGGCGGAGATCACGACGGTGTAGTTGGAATAGGTAATAATATTACAAGCGCACATACTTTATCACTGTCGATGAACACTGGTCCCCCACCGCAGTCGCAGTCCTCCGGCTCGGCGGCTCTACCACTTCTCACGGCCAACGGCGGCGAAAGCTCTTCCTCCGATAACAAACAAGGCAAATCTTCCGCTGCCGAGCTGGACGCTGAAAACGGCGCCGTTGAAGCTGTCCCTAGAAAATCTGTCGATACATTCGGACAAAGAACTTCCATCTACCGCGGAGTAACCAGGCATAGATGGACAGGAAGATACGAAGCTCATCTCTGGGACAATAGTTGCAGAAGAGAAGGACAGACTAGAAAAGGAAGACAAGTCTATTTGGGAGGTTATGACAAAGAAGAAAAGGCTGCTAGAGCTTACGATTTAGCGGCACTGAAATACTGGGGTACCACAACCACAACAAACTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACTCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCAATTTACCGCGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGACCTCTACTTGGGAACTTTCAGTACACAAGAGGAAGCAGCTGAAGCATATGATATAGCCGCAATAAAGTTTAGGGGACTAAACGCAGTGACAAACTTTGACATGAGCCGTTACGATGTAAAAGCCATTCTTGAAAGCAACACATTACCTATTGGCGGCGCAGCCAAGCGCTTAAAAGACATCGACCACTCCGACATACCTCTCGACCCCCAACGAACAGACGACACCATAACGTCACACCTCTCTGATGGAATAATAACCACCACCACTGCTCCCTACAGCGGTGGTGGATGGCCCACGCTCGCCTTCCACCACCATCCCTACGCCTTCCACTACCCGTATGCTACCCCACAACAACGGTTGTGGTGCAAGCAAGAACATGACACTACTGCCATCGCCGCCGACAACTTCTTCCCACATGGTGGGGCTATGGACTCGATGGACCACAGCTCGGGGTCGAGCTCCGTGGTTTACAGCAGTGGTAACGGAGATGGATACAGCGGGAACTTCTTGATCCCAATGGGAGCGGGAGGGGCGGAAGGGAGCAGCAGCAACAACAACAATAGCGGATTGGGAGACATGGGAGAAGTGAATTTATTTGGTAGTTGTTCTAACGTGGATGATCCATACAATGCAACAAGAACGACCAATTTGTATAATTATCATAACCCCTCTCATCAGCTGCAACCACCGCCGCTGTCGTCGGGGTTGCAAGGTTCTAGCTGCAACAACTGGCTTCCTCCGGCAAGGTCGGTATGTCACGGGGGAGCTCCGCCGCCTTTCACCATTTGGAATGACACTTAG 1968 50.81 MGSINWLGFSLSPQHQPSDHPPAAAPFTSDQISPSDVSAVCFDNLPSSYGVYEPFNRNNHSQDWNSMKGLGSTQSSDFSALIETQHQPKLENFLGHHSFTDHDHAAAVYTNASANYMFQNCSLELPSEAGGGGGGGRPNAGNGNTNNTSSIGLSMIKTWLRNQPAPPQAVTKSGGDHDGVVGIGNNITSAHTLSLSMNTGPPPQSQSSGSAALPLLTANGGESSSSDNKQGKSSAAELDAENGAVEAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDPQRTDDTITSHLSDGIITTTTAPYSGGGWPTLAFHHHPYAFHYPYATPQQRLWCKQEHDTTAIAADNFFPHGGAMDSMDHSSGSSSVVYSSGNGDGYSGNFLIPMGAGGAEGSSSNNNNSGLGDMGEVNLFGSCSNVDDPYNATRTTNLYNYHNPSHQLQPPPLSSGLQGSSCNNWLPPARSVCHGGAPPPFTIWNDT 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15777955 15782209 + CrPI670011_11g013550.1 Cre11g1355 513100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1355 655 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 204 457 - -
Cre11g1355 655 Pfam AP2 domain 365 414 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1355 655 Pfam AP2 domain 263 320 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1355 655 SUPERFAMILY DNA-binding domain 363 424 IPR016177 GO:0003677(InterPro)
Cre11g1355 655 FunFam AP2-like ethylene-responsive transcription factor ANT 261 330 - -
Cre11g1355 655 CDD AP2 363 424 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1355 655 PRINTS Ethylene responsive element binding protein signature 404 424 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1355 655 PRINTS Ethylene responsive element binding protein signature 263 274 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1355 655 ProSiteProfiles AP2/ERF domain profile. 364 422 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1355 655 MobiDBLite consensus disorder prediction 10 29 - -
Cre11g1355 655 MobiDBLite consensus disorder prediction 129 150 - -
Cre11g1355 655 SMART rav1_2 262 334 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1355 655 SMART rav1_2 364 428 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1355 655 MobiDBLite consensus disorder prediction 185 235 - -
Cre11g1355 655 CDD AP2 261 330 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1355 655 Gene3D AP2/ERF domain 262 330 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1355 655 Gene3D AP2/ERF domain 364 424 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1355 655 MobiDBLite consensus disorder prediction 164 252 - -
Cre11g1355 655 FunFam AP2-like ethylene-responsive transcription factor 363 424 - -
Cre11g1355 655 SUPERFAMILY DNA-binding domain 261 330 IPR016177 GO:0003677(InterPro)
Cre11g1355 655 ProSiteProfiles AP2/ERF domain profile. 262 328 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2634 Cre-Chr2:39612798 Cre11g1355 Cre-Chr11:15777955 1.60E-103 dispersed
Cre06g2214 Cre-Chr6:29955321 Cre11g1355 Cre-Chr11:15777955 9.30E-102 dispersed
Cre07g1765 Cre-Chr7:33149737 Cre11g1355 Cre-Chr11:15777955 7.40E-98 dispersed
Cre10g0931 Cre-Chr10:12004700 Cre11g1355 Cre-Chr11:15777955 1.00E-98 dispersed
Cre10g1625 Cre-Chr10:30335105 Cre11g1355 Cre-Chr11:15777955 1.60E-64 dispersed
Cre10g1709 Cre-Chr10:31292876 Cre11g1355 Cre-Chr11:15777955 1.40E-35 dispersed
Cre10g2174 Cre-Chr10:36291159 Cre11g1355 Cre-Chr11:15777955 1.40E-42 dispersed
Cre11g1355 Cre-Chr11:15777955 Cre04g1957 Cre-Chr4:37046024 4.00E-07 dispersed
Cre11g1355 Cre-Chr11:15777955 Cre08g1616 Cre-Chr8:28644650 1.20E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54688 PF00847 AP2 1.50E-12 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1355 K09285 - csv:101219473 1060.83