Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g1355 | ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTCTCCCCTCAACACCAACCCTCCGACCACCCTCCTGCCGCCGCCCCCTTCACCTCCGACCAAATCTCCCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCATATGGTGTTTATGAACCCTTCAACCGCAATAATCATTCTCAAGATTGGAATAGTATGAAGGGTTTAGGGTCGACTCAAAGTTCGGATTTTTCTGCTTTAATCGAAACCCAACACCAACCAAAGCTTGAAAATTTCCTCGGTCACCACTCTTTCACCGACCACGACCACGCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGGCTGGCGGCGGCGGCGGCGGTGGAAGACCCAACGCCGGTAACGGAAACACCAACAACACTAGCTCTATTGGGTTATCTATGATTAAGACATGGCTAAGAAATCAACCGGCGCCGCCGCAAGCGGTGACCAAGAGTGGCGGAGATCACGACGGTGTAGTTGGAATAGGTAATAATATTACAAGCGCACATACTTTATCACTGTCGATGAACACTGGTCCCCCACCGCAGTCGCAGTCCTCCGGCTCGGCGGCTCTACCACTTCTCACGGCCAACGGCGGCGAAAGCTCTTCCTCCGATAACAAACAAGGCAAATCTTCCGCTGCCGAGCTGGACGCTGAAAACGGCGCCGTTGAAGCTGTCCCTAGAAAATCTGTCGATACATTCGGACAAAGAACTTCCATCTACCGCGGAGTAACCAGGCATAGATGGACAGGAAGATACGAAGCTCATCTCTGGGACAATAGTTGCAGAAGAGAAGGACAGACTAGAAAAGGAAGACAAGTCTATTTGGGAGGTTATGACAAAGAAGAAAAGGCTGCTAGAGCTTACGATTTAGCGGCACTGAAATACTGGGGTACCACAACCACAACAAACTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACTCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCAATTTACCGCGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGACCTCTACTTGGGAACTTTCAGTACACAAGAGGAAGCAGCTGAAGCATATGATATAGCCGCAATAAAGTTTAGGGGACTAAACGCAGTGACAAACTTTGACATGAGCCGTTACGATGTAAAAGCCATTCTTGAAAGCAACACATTACCTATTGGCGGCGCAGCCAAGCGCTTAAAAGACATCGACCACTCCGACATACCTCTCGACCCCCAACGAACAGACGACACCATAACGTCACACCTCTCTGATGGAATAATAACCACCACCACTGCTCCCTACAGCGGTGGTGGATGGCCCACGCTCGCCTTCCACCACCATCCCTACGCCTTCCACTACCCGTATGCTACCCCACAACAACGGTTGTGGTGCAAGCAAGAACATGACACTACTGCCATCGCCGCCGACAACTTCTTCCCACATGGTGGGGCTATGGACTCGATGGACCACAGCTCGGGGTCGAGCTCCGTGGTTTACAGCAGTGGTAACGGAGATGGATACAGCGGGAACTTCTTGATCCCAATGGGAGCGGGAGGGGCGGAAGGGAGCAGCAGCAACAACAACAATAGCGGATTGGGAGACATGGGAGAAGTGAATTTATTTGGTAGTTGTTCTAACGTGGATGATCCATACAATGCAACAAGAACGACCAATTTGTATAATTATCATAACCCCTCTCATCAGCTGCAACCACCGCCGCTGTCGTCGGGGTTGCAAGGTTCTAGCTGCAACAACTGGCTTCCTCCGGCAAGGTCGGTATGTCACGGGGGAGCTCCGCCGCCTTTCACCATTTGGAATGACACTTAG | 1968 | 50.81 | MGSINWLGFSLSPQHQPSDHPPAAAPFTSDQISPSDVSAVCFDNLPSSYGVYEPFNRNNHSQDWNSMKGLGSTQSSDFSALIETQHQPKLENFLGHHSFTDHDHAAAVYTNASANYMFQNCSLELPSEAGGGGGGGRPNAGNGNTNNTSSIGLSMIKTWLRNQPAPPQAVTKSGGDHDGVVGIGNNITSAHTLSLSMNTGPPPQSQSSGSAALPLLTANGGESSSSDNKQGKSSAAELDAENGAVEAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDPQRTDDTITSHLSDGIITTTTAPYSGGGWPTLAFHHHPYAFHYPYATPQQRLWCKQEHDTTAIAADNFFPHGGAMDSMDHSSGSSSVVYSSGNGDGYSGNFLIPMGAGGAEGSSSNNNNSGLGDMGEVNLFGSCSNVDDPYNATRTTNLYNYHNPSHQLQPPPLSSGLQGSSCNNWLPPARSVCHGGAPPPFTIWNDT | 655 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 15777955 | 15782209 | + | CrPI670011_11g013550.1 | Cre11g1355 | 513100 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g1355 | 655 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 204 | 457 | - | - | |
Cre11g1355 | 655 | Pfam | AP2 domain | 365 | 414 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1355 | 655 | Pfam | AP2 domain | 263 | 320 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1355 | 655 | SUPERFAMILY | DNA-binding domain | 363 | 424 | IPR016177 | GO:0003677(InterPro) | |
Cre11g1355 | 655 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 261 | 330 | - | - | |
Cre11g1355 | 655 | CDD | AP2 | 363 | 424 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1355 | 655 | PRINTS | Ethylene responsive element binding protein signature | 404 | 424 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1355 | 655 | PRINTS | Ethylene responsive element binding protein signature | 263 | 274 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1355 | 655 | ProSiteProfiles | AP2/ERF domain profile. | 364 | 422 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1355 | 655 | MobiDBLite | consensus disorder prediction | 10 | 29 | - | - | |
Cre11g1355 | 655 | MobiDBLite | consensus disorder prediction | 129 | 150 | - | - | |
Cre11g1355 | 655 | SMART | rav1_2 | 262 | 334 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1355 | 655 | SMART | rav1_2 | 364 | 428 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1355 | 655 | MobiDBLite | consensus disorder prediction | 185 | 235 | - | - | |
Cre11g1355 | 655 | CDD | AP2 | 261 | 330 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1355 | 655 | Gene3D | AP2/ERF domain | 262 | 330 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1355 | 655 | Gene3D | AP2/ERF domain | 364 | 424 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1355 | 655 | MobiDBLite | consensus disorder prediction | 164 | 252 | - | - | |
Cre11g1355 | 655 | FunFam | AP2-like ethylene-responsive transcription factor | 363 | 424 | - | - | |
Cre11g1355 | 655 | SUPERFAMILY | DNA-binding domain | 261 | 330 | IPR016177 | GO:0003677(InterPro) | |
Cre11g1355 | 655 | ProSiteProfiles | AP2/ERF domain profile. | 262 | 328 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2634 | Cre-Chr2:39612798 | Cre11g1355 | Cre-Chr11:15777955 | 1.60E-103 | dispersed | |
Cre06g2214 | Cre-Chr6:29955321 | Cre11g1355 | Cre-Chr11:15777955 | 9.30E-102 | dispersed | |
Cre07g1765 | Cre-Chr7:33149737 | Cre11g1355 | Cre-Chr11:15777955 | 7.40E-98 | dispersed | |
Cre10g0931 | Cre-Chr10:12004700 | Cre11g1355 | Cre-Chr11:15777955 | 1.00E-98 | dispersed | |
Cre10g1625 | Cre-Chr10:30335105 | Cre11g1355 | Cre-Chr11:15777955 | 1.60E-64 | dispersed | |
Cre10g1709 | Cre-Chr10:31292876 | Cre11g1355 | Cre-Chr11:15777955 | 1.40E-35 | dispersed | |
Cre10g2174 | Cre-Chr10:36291159 | Cre11g1355 | Cre-Chr11:15777955 | 1.40E-42 | dispersed | |
Cre11g1355 | Cre-Chr11:15777955 | Cre04g1957 | Cre-Chr4:37046024 | 4.00E-07 | dispersed | |
Cre11g1355 | Cre-Chr11:15777955 | Cre08g1616 | Cre-Chr8:28644650 | 1.20E-96 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54688 | PF00847 | AP2 | 1.50E-12 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g1355 | K09285 | - | csv:101219473 | 1060.83 |