Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1358 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGACGGCTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGGTGCCGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATACAGCAGCGGCAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCGATTTCAAAAGTAGCCGCTAGCATCTTGCTTCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGATCTGTTGGCTTACTAGAAAAACCAGTTTTGCGACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGTGCTTTTGAACGGGAACAACAATGCCCAACAAATCATCCATGA 561 46.52 MESEDELDMHDAHDDDGSVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLEKPVLRHSNELELPCGICFEIYSRDKIQSAACGHPFCNACWTGAFEREQQCPTNHP 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16449563 16458435 + CrPI670011_11g013580.1 Cre11g1358 513103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1358 186 MobiDBLite consensus disorder prediction 1 58 - -
Cre11g1358 186 ProSiteProfiles Zinc finger RING-type profile. 145 185 IPR001841 -
Cre11g1358 186 MobiDBLite consensus disorder prediction 1 55 - -
Cre11g1358 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 185 IPR013083 -
Cre11g1358 186 SUPERFAMILY RING/U-box 144 183 - -
Cre11g1358 186 Pfam Zinc finger, C3HC4 type (RING finger) 145 183 - -
Cre11g1358 186 PANTHER RING FINGER DOMAIN-CONTAINING 69 183 IPR047134 -
Cre11g1358 186 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 78 117 IPR048962 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1358 K11968 - - csv:101218052 293.123
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g0670 . 164 589 ARIADNE family AT4G34370 72.4 6.6e-184 640.6
Cre01g0670 . 58 542 ARIADNE family AT2G16090 77.2 1.5e-224 775.8
Cre01g0670 . 38 543 ARIADNE family AT3G27710 62.0 3.7e-184 641.7
Cre01g0670 . 44 522 ARIADNE family AT3G27720 54.5 5.9e-144 508.1
Cre08g0424 . 61 535 ARIADNE family AT1G05890 73.7 2.0e-218 755.7
Cre11g1362 . 5 261 ARIADNE family AT1G05890 73.9 7.2e-112 401.7
Cre08g0424 . 57 589 ARIADNE family AT1G65430 72.2 3.5e-241 831.2
Cre11g1362 . 5 313 ARIADNE family AT1G65430 74.4 3.7e-134 475.7
Cre11g1358 . 37 173 ARIADNE family AT1G65430 65.0 2.2e-46 184.1
Cre08g0424 . 58 454 ARIADNE family AT2G31780 58.4 5.3e-144 508.1
Cre11g1362 . 13 176 ARIADNE family AT2G31780 56.1 1.5e-50 197.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72