Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1358 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGACGGCTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGGTGCCGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGCCACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATACAGCAGCGGCAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCGATTTCAAAAGTAGCCGCTAGCATCTTGCTTCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGATCTGTTGGCTTACTAGAAAAACCAGTTTTGCGACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATTCACGTGATAAGATCCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGTGCTTTTGAACGGGAACAACAATGCCCAACAAATCATCCATGA 561 46.52 MESEDELDMHDAHDDDGSVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIQQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLEKPVLRHSNELELPCGICFEIYSRDKIQSAACGHPFCNACWTGAFEREQQCPTNHP 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16449563 16458435 + CrPI670011_11g013580.1 Cre11g1358 513103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1358 186 MobiDBLite consensus disorder prediction 1 58 - -
Cre11g1358 186 ProSiteProfiles Zinc finger RING-type profile. 145 185 IPR001841 -
Cre11g1358 186 MobiDBLite consensus disorder prediction 1 55 - -
Cre11g1358 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 185 IPR013083 -
Cre11g1358 186 SUPERFAMILY RING/U-box 144 183 - -
Cre11g1358 186 Pfam Zinc finger, C3HC4 type (RING finger) 145 183 - -
Cre11g1358 186 PANTHER RING FINGER DOMAIN-CONTAINING 69 183 IPR047134 -
Cre11g1358 186 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 78 117 IPR048962 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1358 K11968 - csv:101218052 293.123