Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1362 ATGAAAAAGAGATTGAAAAACTATGCTTCTCAAAGGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATATGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCGGATCTCCATCAAATGCAAACCTTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAACTGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTATGCTCAAAGAGTACTAGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCGAATGTTAAATCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA 942 43.52 MKKRLKNYASQRILANSKPCPKCKRPIEKNQGCMHITCTPPCKYEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTLHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLTAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVCSKSTSGCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16497025 16506557 + CrPI670011_11g013620.1 Cre11g1362 513107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1362 313 SUPERFAMILY RING/U-box 13 60 - -
Cre11g1362 313 CDD Rcat_RBR_ARI7-like 16 70 - -
Cre11g1362 313 FunFam RBR-type E3 ubiquitin transferase 2 245 - -
Cre11g1362 313 SUPERFAMILY Ran binding protein zinc finger-like 286 313 IPR036443 -
Cre11g1362 313 ProSiteProfiles TRIAD supradomain profile. 1 71 IPR044066 -
Cre11g1362 313 Pfam Ariadne domain 80 243 IPR045840 -
Cre11g1362 313 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 118 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cre11g1362 313 Gene3D - 2 246 - -
Cre11g1362 313 ProSiteProfiles Zinc finger RanBP2 type profile. 286 313 IPR001876 -
Cre11g1362 313 Pfam IBR domain 15 55 - -
Cre11g1362 313 ProSitePatterns Zinc finger RanBP2-type signature. 290 309 IPR001876 -
Cre11g1362 313 Gene3D - 285 313 - -
Cre11g1362 313 SMART zf_4 288 312 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1362 K11968 - - csv:101218052 614.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0424 Cre-Chr8:14396679 Cre11g1362 Cre-Chr11:16497025 2.10E-140 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g0670 . 164 589 ARIADNE family AT4G34370 72.4 6.6e-184 640.6
Cre01g0670 . 58 542 ARIADNE family AT2G16090 77.2 1.5e-224 775.8
Cre01g0670 . 38 543 ARIADNE family AT3G27710 62.0 3.7e-184 641.7
Cre01g0670 . 44 522 ARIADNE family AT3G27720 54.5 5.9e-144 508.1
Cre08g0424 . 61 535 ARIADNE family AT1G05890 73.7 2.0e-218 755.7
Cre11g1362 . 5 261 ARIADNE family AT1G05890 73.9 7.2e-112 401.7
Cre08g0424 . 57 589 ARIADNE family AT1G65430 72.2 3.5e-241 831.2
Cre11g1362 . 5 313 ARIADNE family AT1G65430 74.4 3.7e-134 475.7
Cre11g1358 . 37 173 ARIADNE family AT1G65430 65.0 2.2e-46 184.1
Cre08g0424 . 58 454 ARIADNE family AT2G31780 58.4 5.3e-144 508.1
Cre11g1362 . 13 176 ARIADNE family AT2G31780 56.1 1.5e-50 197.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72