Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1362 ATGAAAAAGAGATTGAAAAACTATGCTTCTCAAAGGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATATGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCGGATCTCCATCAAATGCAAACCTTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAACTGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTATGCTCAAAGAGTACTAGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCGAATGTTAAATCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA 942 43.52 MKKRLKNYASQRILANSKPCPKCKRPIEKNQGCMHITCTPPCKYEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTLHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLTAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVCSKSTSGCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16497025 16506557 + CrPI670011_11g013620.1 Cre11g1362 513107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1362 313 SUPERFAMILY RING/U-box 13 60 - -
Cre11g1362 313 CDD Rcat_RBR_ARI7-like 16 70 - -
Cre11g1362 313 FunFam RBR-type E3 ubiquitin transferase 2 245 - -
Cre11g1362 313 SUPERFAMILY Ran binding protein zinc finger-like 286 313 IPR036443 -
Cre11g1362 313 ProSiteProfiles TRIAD supradomain profile. 1 71 IPR044066 -
Cre11g1362 313 Pfam Ariadne domain 80 243 IPR045840 -
Cre11g1362 313 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 118 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cre11g1362 313 Gene3D - 2 246 - -
Cre11g1362 313 ProSiteProfiles Zinc finger RanBP2 type profile. 286 313 IPR001876 -
Cre11g1362 313 Pfam IBR domain 15 55 - -
Cre11g1362 313 ProSitePatterns Zinc finger RanBP2-type signature. 290 309 IPR001876 -
Cre11g1362 313 Gene3D - 285 313 - -
Cre11g1362 313 SMART zf_4 288 312 IPR001876 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0424 Cre-Chr8:14396679 Cre11g1362 Cre-Chr11:16497025 2.10E-140 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1362 K11968 - csv:101218052 614.379