Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g1362 | ATGAAAAAGAGATTGAAAAACTATGCTTCTCAAAGGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATATGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCGGATCTCCATCAAATGCAAACCTTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAACTGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTATGCTCAAAGAGTACTAGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCGAATGTTAAATCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA | 942 | 43.52 | MKKRLKNYASQRILANSKPCPKCKRPIEKNQGCMHITCTPPCKYEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTLHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLTAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVCSKSTSGCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 16497025 | 16506557 | + | CrPI670011_11g013620.1 | Cre11g1362 | 513107 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g1362 | 313 | SUPERFAMILY | RING/U-box | 13 | 60 | - | - | |
Cre11g1362 | 313 | CDD | Rcat_RBR_ARI7-like | 16 | 70 | - | - | |
Cre11g1362 | 313 | FunFam | RBR-type E3 ubiquitin transferase | 2 | 245 | - | - | |
Cre11g1362 | 313 | SUPERFAMILY | Ran binding protein zinc finger-like | 286 | 313 | IPR036443 | - | |
Cre11g1362 | 313 | ProSiteProfiles | TRIAD supradomain profile. | 1 | 71 | IPR044066 | - | |
Cre11g1362 | 313 | Pfam | Ariadne domain | 80 | 243 | IPR045840 | - | |
Cre11g1362 | 313 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 16 | 118 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
Cre11g1362 | 313 | Gene3D | - | 2 | 246 | - | - | |
Cre11g1362 | 313 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 286 | 313 | IPR001876 | - | |
Cre11g1362 | 313 | Pfam | IBR domain | 15 | 55 | - | - | |
Cre11g1362 | 313 | ProSitePatterns | Zinc finger RanBP2-type signature. | 290 | 309 | IPR001876 | - | |
Cre11g1362 | 313 | Gene3D | - | 285 | 313 | - | - | |
Cre11g1362 | 313 | SMART | zf_4 | 288 | 312 | IPR001876 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g0424 | Cre-Chr8:14396679 | Cre11g1362 | Cre-Chr11:16497025 | 2.10E-140 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g1362 | K11968 | - | csv:101218052 | 614.379 |