Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1393 ATGAATAATAAAGGGTTCCTCACGGATCGGTACTCTGAAACTGGTGGGCGTCGGGGTTTCAATCGGGCGGTTGGCCTGGAGTGCATTCTAAGCATTGTTAGGGCACTTCGGATGGGGTCCTGCTTGTCTTCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACTTCTCCGGCTAAGCATCATCGGAGCAAGAACAGTTCCAAGAGGCGATATGGTTCTAGGAATTCCTCCTTTGGGGATCTCTCACTTCATCGAATCCCCGGCAGGCTCTTCGCTAATGGCTTCACTGATGTGGCGTCTCTGTTCACCCAGCAGGGCAAGAAAGGGACCAATCAGGATGCCATGATTGTTTGGGAGAATTTCGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTTAACTTGACCACGGATGATGTTCATAGAGAGATCAATCTTAATACAGGAAGTATGAACTCGGATGAAGCTACTTCCTTTTTATCTGCTGAAGAAGAGTCAAGGGCCTCCACTGATGTTGATGGAACGGAAAAGCAACCTGAAATTTTCCATACTCTGAAGGAGTCATTTCTTAAGGCTTTTAGAGTTATGGACTGGGAACTCAGAATGCACCAAACTATAGATAGCTTCTGTAGTGGGACTACAGCAGTGACTATTGTTAAACAGGGTCAGGATCTTGTCATTGGAAATGTTGGGGACTCCCGAGCTGTTTTGGGTATGAGAGATAAAGATGACTCGCTTGTTGCCATTCAATTGACTGTGGATCTCAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAGGTGTAGAGGTCGTGTCTTTGCTCTCCAAGATGAACCTGATGTAGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCACGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATCTCTGTACCAGAAATATCATATCGACGGCTCACTGAAAAAGACGAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTTCTGTCAAACAAAGAGGTTGTAGATATTGTTGCATCAGCTCCAAAACGTACTACTGCAGCTCGAACTCTGGTCGAAACTGCCATTAAAGCATGGAAACATAAATACCCAACTTCCAAGATTGATGACTGTGCGGTCGTTTGCCTCTTCCTCGACTCAAACTCCAGCAATCTATCATCTGCTTCCAATACCAAACCGGAAGAGCAACAAAGTTTAACAGAACAAGTCAGCACTGCAGTTGAGAATGAAAATTTCTCTGTCCCAAATGGTCTGAATCGTTCAGGAACTGTCCGCACCACCAGCAAGGAGATTTTGCAGGATGGAAGTGATGAAGAAGAAGATGAATCGAAGGAGGAAGAACATTCAGAAATGGGAATAGAATGGTCTGCCCTGGAAGGAGTGTCGCGCGTAAACACTTTGGTAACCCTGCCAAGATTCGATCCTGGAAAAGAAGATAAGAAAGGGCGGAAGTAA 1572 46.18 MNNKGFLTDRYSETGGRRGFNRAVGLECILSIVRALRMGSCLSSESRSPIPGSPTSPAKHHRSKNSSKRRYGSRNSSFGDLSLHRIPGRLFANGFTDVASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREINLNTGSMNSDEATSFLSAEEESRASTDVDGTEKQPEIFHTLKESFLKAFRVMDWELRMHQTIDSFCSGTTAVTIVKQGQDLVIGNVGDSRAVLGMRDKDDSLVAIQLTVDLKPNLPAEAERIRRCRGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVDIVASAPKRTTAARTLVETAIKAWKHKYPTSKIDDCAVVCLFLDSNSSNLSSASNTKPEEQQSLTEQVSTAVENENFSVPNGLNRSGTVRTTSKEILQDGSDEEEDESKEEEHSEMGIEWSALEGVSRVNTLVTLPRFDPGKEDKKGRK 523
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 17786343 17789960 + CrPI670011_11g013930.1 Cre11g1393 513138
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1393 523 MobiDBLite consensus disorder prediction 450 495 - -
Cre11g1393 523 Pfam Protein phosphatase 2C 167 396 IPR001932 -
Cre11g1393 523 Gene3D - 96 420 IPR036457 -
Cre11g1393 523 ProSiteProfiles PPM-type phosphatase domain profile. 98 417 IPR001932 -
Cre11g1393 523 SUPERFAMILY PP2C-like 98 418 IPR036457 -
Cre11g1393 523 MobiDBLite consensus disorder prediction 183 203 - -
Cre11g1393 523 CDD PP2Cc 98 417 IPR001932 -
Cre11g1393 523 PANTHER PROTEIN PHOSPHATASE 70 416 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre11g1393 523 SMART PP2C_4 89 415 IPR001932 -
Cre11g1393 523 FunFam probable protein phosphatase 2C 33 93 420 - -
Cre11g1393 523 MobiDBLite consensus disorder prediction 44 76 - -
Cre11g1393 523 MobiDBLite consensus disorder prediction 450 469 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1841 Cre-Chr2:31693041 Cre11g1393 Cre-Chr11:17786343 8.40E-95 dispersed
Cre03g1328 Cre-Chr3:23326276 Cre11g1393 Cre-Chr11:17786343 1.40E-143 dispersed
Cre04g0763 Cre-Chr4:26180100 Cre11g1393 Cre-Chr11:17786343 1.70E-94 dispersed
Cre05g0683 Cre-Chr5:6004867 Cre11g1393 Cre-Chr11:17786343 6.90E-24 dispersed
Cre06g1319 Cre-Chr6:7144544 Cre11g1393 Cre-Chr11:17786343 9.00E-26 dispersed
Cre08g0420 Cre-Chr8:14172281 Cre11g1393 Cre-Chr11:17786343 7.80E-141 dispersed
Cre10g0602 Cre-Chr10:5556265 Cre11g1393 Cre-Chr11:17786343 3.60E-131 dispersed
Cre11g1393 Cre-Chr11:17786343 Cre11g2195 Cre-Chr11:33662839 9.00E-18 dispersed
Cre11g1393 Cre-Chr11:17786343 Cre02g0457 Cre-Chr2:1823589 2.00E-113 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1393 - - - 0.0