Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre11g1393 | ATGAATAATAAAGGGTTCCTCACGGATCGGTACTCTGAAACTGGTGGGCGTCGGGGTTTCAATCGGGCGGTTGGCCTGGAGTGCATTCTAAGCATTGTTAGGGCACTTCGGATGGGGTCCTGCTTGTCTTCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACTTCTCCGGCTAAGCATCATCGGAGCAAGAACAGTTCCAAGAGGCGATATGGTTCTAGGAATTCCTCCTTTGGGGATCTCTCACTTCATCGAATCCCCGGCAGGCTCTTCGCTAATGGCTTCACTGATGTGGCGTCTCTGTTCACCCAGCAGGGCAAGAAAGGGACCAATCAGGATGCCATGATTGTTTGGGAGAATTTCGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTTAACTTGACCACGGATGATGTTCATAGAGAGATCAATCTTAATACAGGAAGTATGAACTCGGATGAAGCTACTTCCTTTTTATCTGCTGAAGAAGAGTCAAGGGCCTCCACTGATGTTGATGGAACGGAAAAGCAACCTGAAATTTTCCATACTCTGAAGGAGTCATTTCTTAAGGCTTTTAGAGTTATGGACTGGGAACTCAGAATGCACCAAACTATAGATAGCTTCTGTAGTGGGACTACAGCAGTGACTATTGTTAAACAGGGTCAGGATCTTGTCATTGGAAATGTTGGGGACTCCCGAGCTGTTTTGGGTATGAGAGATAAAGATGACTCGCTTGTTGCCATTCAATTGACTGTGGATCTCAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAGGTGTAGAGGTCGTGTCTTTGCTCTCCAAGATGAACCTGATGTAGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCACGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATCTCTGTACCAGAAATATCATATCGACGGCTCACTGAAAAAGACGAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTTCTGTCAAACAAAGAGGTTGTAGATATTGTTGCATCAGCTCCAAAACGTACTACTGCAGCTCGAACTCTGGTCGAAACTGCCATTAAAGCATGGAAACATAAATACCCAACTTCCAAGATTGATGACTGTGCGGTCGTTTGCCTCTTCCTCGACTCAAACTCCAGCAATCTATCATCTGCTTCCAATACCAAACCGGAAGAGCAACAAAGTTTAACAGAACAAGTCAGCACTGCAGTTGAGAATGAAAATTTCTCTGTCCCAAATGGTCTGAATCGTTCAGGAACTGTCCGCACCACCAGCAAGGAGATTTTGCAGGATGGAAGTGATGAAGAAGAAGATGAATCGAAGGAGGAAGAACATTCAGAAATGGGAATAGAATGGTCTGCCCTGGAAGGAGTGTCGCGCGTAAACACTTTGGTAACCCTGCCAAGATTCGATCCTGGAAAAGAAGATAAGAAAGGGCGGAAGTAA | 1572 | 46.18 | MNNKGFLTDRYSETGGRRGFNRAVGLECILSIVRALRMGSCLSSESRSPIPGSPTSPAKHHRSKNSSKRRYGSRNSSFGDLSLHRIPGRLFANGFTDVASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREINLNTGSMNSDEATSFLSAEEESRASTDVDGTEKQPEIFHTLKESFLKAFRVMDWELRMHQTIDSFCSGTTAVTIVKQGQDLVIGNVGDSRAVLGMRDKDDSLVAIQLTVDLKPNLPAEAERIRRCRGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVDIVASAPKRTTAARTLVETAIKAWKHKYPTSKIDDCAVVCLFLDSNSSNLSSASNTKPEEQQSLTEQVSTAVENENFSVPNGLNRSGTVRTTSKEILQDGSDEEEDESKEEEHSEMGIEWSALEGVSRVNTLVTLPRFDPGKEDKKGRK | 523 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 17786343 | 17789960 | + | CrPI670011_11g013930.1 | Cre11g1393 | 513138 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre11g1393 | 523 | MobiDBLite | consensus disorder prediction | 450 | 495 | - | - | |
| Cre11g1393 | 523 | Pfam | Protein phosphatase 2C | 167 | 396 | IPR001932 | - | |
| Cre11g1393 | 523 | Gene3D | - | 96 | 420 | IPR036457 | - | |
| Cre11g1393 | 523 | ProSiteProfiles | PPM-type phosphatase domain profile. | 98 | 417 | IPR001932 | - | |
| Cre11g1393 | 523 | SUPERFAMILY | PP2C-like | 98 | 418 | IPR036457 | - | |
| Cre11g1393 | 523 | MobiDBLite | consensus disorder prediction | 183 | 203 | - | - | |
| Cre11g1393 | 523 | CDD | PP2Cc | 98 | 417 | IPR001932 | - | |
| Cre11g1393 | 523 | PANTHER | PROTEIN PHOSPHATASE | 70 | 416 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Cre11g1393 | 523 | SMART | PP2C_4 | 89 | 415 | IPR001932 | - | |
| Cre11g1393 | 523 | FunFam | probable protein phosphatase 2C 33 | 93 | 420 | - | - | |
| Cre11g1393 | 523 | MobiDBLite | consensus disorder prediction | 44 | 76 | - | - | |
| Cre11g1393 | 523 | MobiDBLite | consensus disorder prediction | 450 | 469 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g1841 | Cre-Chr2:31693041 | Cre11g1393 | Cre-Chr11:17786343 | 8.40E-95 | dispersed | |
| Cre03g1328 | Cre-Chr3:23326276 | Cre11g1393 | Cre-Chr11:17786343 | 1.40E-143 | dispersed | |
| Cre04g0763 | Cre-Chr4:26180100 | Cre11g1393 | Cre-Chr11:17786343 | 1.70E-94 | dispersed | |
| Cre05g0683 | Cre-Chr5:6004867 | Cre11g1393 | Cre-Chr11:17786343 | 6.90E-24 | dispersed | |
| Cre06g1319 | Cre-Chr6:7144544 | Cre11g1393 | Cre-Chr11:17786343 | 9.00E-26 | dispersed | |
| Cre08g0420 | Cre-Chr8:14172281 | Cre11g1393 | Cre-Chr11:17786343 | 7.80E-141 | dispersed | |
| Cre10g0602 | Cre-Chr10:5556265 | Cre11g1393 | Cre-Chr11:17786343 | 3.60E-131 | dispersed | |
| Cre11g1393 | Cre-Chr11:17786343 | Cre11g2195 | Cre-Chr11:33662839 | 9.00E-18 | dispersed | |
| Cre11g1393 | Cre-Chr11:17786343 | Cre02g0457 | Cre-Chr2:1823589 | 2.00E-113 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre11g1393 | - | - | - | 0.0 |