Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1402 ATGCAGAATCATCAACAAATGAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTTCTGAGCTTCATCAAAGATTTGTTGAGTCTGTCAATCATCTTGGTGGAGCAGATAAGGCCACCCCTAAGAGCTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAGAGCCACTTACAGAAATACAGGTTGGGAAAAAGCCAGCAGTCTGAAACCAATGCCCAACTCAAGCTAGAAGAGATGCAGAGAAAAGGTGGGCATTTTGATGGAGAAGAAAACAAGGATAGAAGTCAAAATCATAACAAAACAGAGAGCATGAAGATATCCGAAGCTCTAGAAATGCAAATGGAAGTACAGAAGAGATTACAAGAGCAAATAGAGGTACAAAGGCATTTACAACTGAGAATCGAAGCACAAGGAAAATATTTAAAGACAGTGTTAAGAAAGGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTCTCTCAATTGGCTTCAATGGTGAGTTCTGGTTGTCAGAGCTCTTCTTTATCAGAACTGACTGACTCGACAGAACTGAATTTCAAAGGCATTGAAAGAGTAGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACGTCTTCAGAGACCTCAGAGCAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAGGAAAAGGAAAAAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCATAAAAGTGATGAGGAACACGAAGAATTCAGAATGATCGACTTGAATGATTCTCAATTTGACGATAATACAAGTGGAATTGAATCACAGTTGATTGAGTTCCTTTAA 891 40.07 MQNHQQMNLVLSTDAKPRLKWTSELHQRFVESVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQQSETNAQLKLEEMQRKGGHFDGEENKDRSQNHNKTESMKISEALEMQMEVQKRLQEQIEVQRHLQLRIEAQGKYLKTVLRKAQETIAGYGCCSEALEEAKAELSQLASMVSSGCQSSSLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEQAPITKKRKGKEKEKEKEQSSSVSEGDCKRLTMHKSDEEHEEFRMIDLNDSQFDDNTSGIESQLIEFL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18190733 18192081 - CrPI670011_11g014020.1 Cre11g1402 513147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1402 296 FunFam Myb family transcription factor 15 73 - -
Cre11g1402 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 277 IPR046955 GO:0003700(InterPro)
Cre11g1402 296 MobiDBLite consensus disorder prediction 230 277 - -
Cre11g1402 296 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Cre11g1402 296 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Cre11g1402 296 MobiDBLite consensus disorder prediction 218 284 - -
Cre11g1402 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677(InterPro)
Cre11g1402 296 Gene3D - 15 73 - -
Cre11g1402 296 MobiDBLite consensus disorder prediction 90 109 - -
Cre11g1402 296 Pfam MYB-CC type transfactor, LHEQLE motif 112 159 IPR025756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1402 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1479 Cre-Chr10:28623454 Cre11g1402 Cre-Chr11:18190733 2.60E-38 dispersed
Cre10g1808 Cre-Chr10:32486563 Cre11g1402 Cre-Chr11:18190733 1.00E-19 dispersed
Cre11g0755 Cre-Chr11:4765142 Cre11g1402 Cre-Chr11:18190733 7.50E-09 dispersed
Cre11g1402 Cre-Chr11:18190733 Cre11g2062 Cre-Chr11:32419062 6.50E-13 dispersed
Cre11g1402 Cre-Chr11:18190733 Cre02g2184 Cre-Chr2:35487802 2.40E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0421 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.1e-79 293.9
Cre01g0200 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.7e-42 168.3
Cre02g2184 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.8e-40 162.2
Cre07g0585 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.1e-39 161.0
Cre04g1728 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.8e-37 152.5
Cre05g1232 . 163 363 G2-like Transcription Factor Family AT5G16560 56.5 8.7e-45 178.3
Cre09g1112 . 197 401 G2-like Transcription Factor Family AT5G16560 51.7 1.3e-40 164.5
Cre05g2130 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 5.5e-41 164.9
Cre08g1490 . 53 139 G2-like Transcription Factor Family AT5G42630 83.9 1.4e-36 150.2
Cre05g2473 . 19 256 G2-like Transcription Factor Family AT1G25550 55.1 3.5e-53 205.7
Cre08g0476 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.6e-52 201.4
Cre03g0444 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 2.7e-60 229.6
Cre04g0637 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.5e-74 275.0
Cre10g1770 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 7.5e-69 257.7
Cre05g0421 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 2.5e-65 246.1
Cre05g0421 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.1e-79 293.9
Cre01g0200 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.7e-42 168.3
Cre02g2184 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.8e-40 162.2
Cre07g0585 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.1e-39 161.0
Cre04g1728 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.8e-37 152.5
Cre11g1402 . 1 228 G2-like Transcription Factor Family AT1G69580 55.6 2.9e-49 193.0
Cre01g0200 . 1 389 G2-like Transcription Factor Family AT1G79430 53.7 6.5e-84 308.1
Cre02g2184 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 8.0e-74 274.6
Cre05g0421 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.7e-39 159.5
Cre04g1727 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.2e-56 216.1
Cre04g0637 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.4e-91 333.6
Cre10g1770 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 3.0e-83 305.8
Cre04g0637 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.7e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004564 2 2 1 2 1 1 2 0 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54689 PF14379 Myb_CC_LHEQLE 1.60E-22 No_clan Cre TF