Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1406 ATGGAGTTTCATTTCCTCTTTTTAGTGCCCTTTCTCTCACTCCTCTCTTCCGCCGCCGCCTGGATTAATGCTCATGCCACCTTCTACGGCGGCAGCGATGCTTCCGGGACAATGGGTGGAGCTTGTGGGTATGGGAATCTTTACAGTGAAGGCTACGGAACCAACACTGCAGCAGTTAGCACTGCTCTTTTCAACAATGGGTTGAGCTGTGGGTCTTGTTATGAAATCAAGTGCGTTAATGACCCGAAATGGTGCCTCCATGGCTCTATTTTGGTCACTGCAACCAATTTCTGTCCGCCCAATAATGCACTTCCTAATAACGCCGGCGGCTGGTGCAACCCTCCCCTCCACCACTTTGACCTCTCCCAGTCCGTCTTCCTCCGCATTGCTCAATACCACGCCGGCATCGTCCCAGTCGTCTATCGCAGAGCTCCATGTAAGAGGAAGGGAGGAGTAAGGTTCACAATCAATGGGCATTCCTACTTCAACTTAGTGCTAATAACCAACGTCGGGGGCGCCGGGGATGTGCATGCGGTGTCCGTGAAAGGGTCTAGAACTAGTTGGCAATCAATGTCCAGAAATTGGGGACAGAACTGGCAAAGCCACACCTATTTGGATGGTCAAACCCTCTCTTTCAAGCTCACTACTAGCGACGGCCGTACGCTTATTTCCAACAATGTCGTTCCTGCCGGCTGGTCCTTTGGCCAGACCTTCACCGGCGCCCAATTCCGGTGA 735 52.38 MEFHFLFLVPFLSLLSSAAAWINAHATFYGGSDASGTMGGACGYGNLYSEGYGTNTAAVSTALFNNGLSCGSCYEIKCVNDPKWCLHGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQSVFLRIAQYHAGIVPVVYRRAPCKRKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTSWQSMSRNWGQNWQSHTYLDGQTLSFKLTTSDGRTLISNNVVPAGWSFGQTFTGAQFR 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18373768 18375310 + CrPI670011_11g014060.1 Cre11g1406 513151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1406 244 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576(InterPro)
Cre11g1406 244 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Cre11g1406 244 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576(InterPro)
Cre11g1406 244 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Cre11g1406 244 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Cre11g1406 244 PRINTS Expansin/Lol pI family signature 20 35 IPR007118 GO:0005576(InterPro)
Cre11g1406 244 Gene3D - 13 147 IPR036908 -
Cre11g1406 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 151 IPR007112 -
Cre11g1406 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
Cre11g1406 244 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Cre11g1406 244 PRINTS Expansin signature 51 65 IPR002963 GO:0009664(InterPro)
Cre11g1406 244 PRINTS Expansin signature 109 126 IPR002963 GO:0009664(InterPro)
Cre11g1406 244 PRINTS Expansin signature 126 139 IPR002963 GO:0009664(InterPro)
Cre11g1406 244 PRINTS Expansin signature 150 162 IPR002963 GO:0009664(InterPro)
Cre11g1406 244 PRINTS Expansin signature 90 100 IPR002963 GO:0009664(InterPro)
Cre11g1406 244 PRINTS Expansin signature 162 183 IPR002963 GO:0009664(InterPro)
Cre11g1406 244 PRINTS Expansin signature 197 218 IPR002963 GO:0009664(InterPro)
Cre11g1406 244 PRINTS Expansin signature 226 242 IPR002963 GO:0009664(InterPro)
Cre11g1406 244 PRINTS Expansin signature 78 89 IPR002963 GO:0009664(InterPro)
Cre11g1406 244 Gene3D - 151 243 IPR036749 -
Cre11g1406 244 PANTHER EXPANSIN-A15 9 243 IPR002963 GO:0009664(InterPro)
Cre11g1406 244 FunFam Expansin 13 147 - -
Cre11g1406 244 SUPERFAMILY Barwin-like endoglucanases 12 169 IPR036908 -
Cre11g1406 244 FunFam Expansin 151 243 - -
Cre11g1406 244 Pfam Lytic transglycolase 56 141 IPR009009 -
Cre11g1406 244 SUPERFAMILY PHL pollen allergen 148 240 IPR036749 -
Cre11g1406 244 CDD DPBB_EXPA_N 21 146 - -
Cre11g1406 244 SMART dpbb_1 56 141 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0644 Cre-Chr1:5873567 Cre11g1406 Cre-Chr11:18373768 2.00E-105 dispersed
Cre06g2477 Cre-Chr6:32556763 Cre11g1406 Cre-Chr11:18373768 4.80E-110 dispersed
Cre07g0895 Cre-Chr7:7955803 Cre11g1406 Cre-Chr11:18373768 4.20E-106 dispersed
Cre10g0873 Cre-Chr10:9921863 Cre11g1406 Cre-Chr11:18373768 2.20E-67 dispersed
Cre11g1052 Cre-Chr11:7965287 Cre11g1406 Cre-Chr11:18373768 5.90E-105 dispersed
Cre11g1406 Cre-Chr11:18373768 Cre05g2585 Cre-Chr5:37029535 7.70E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1406 - - - 0.0