Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1419 ATGGAGCATGGAGATGTTGTGTCGAAGGGCATGGTGTCAGACCCTTCAAGTTCGTACAAAAAAATCATAATAGTTGCGGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTGACACCTTACGTACAGCAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGTGGGCCATTATCAGGGCTTATTGTCCAACCCACTGTTGGATATTACAGCGATCGTTGCACTTCTAGGTTTGGTCGTCGTCGACCATTCATTGCTGCTGGGGCTGGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGGCATGCAGCGGGAGATCAACTTGCTGCACGCACAAAACCAAGGGCTGTAGCCATATTTGTAGTTGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCAGGTACCAACCACAAGAAGATGAGAATGGCCAATGGTTTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGTTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCCTTCACAATAACCAAAGCATGTGACACTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTGTTTCTCCTCCTCATTACCACCTTTGCCGTGTTTACAGTCAGCGAGAAGCAATTTGAGCGCTTGGAGATTGACGAAGAAGCAACACCCTTTTTCGGGAAGTTGCTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATCTTGTTACTCGTAACAGCTTTGAACTGGATTGGTTGGTTCCCATTTATAATGTATGACACTGACTGGATGGGTTTGGAAGTGTACGGAGGAAAGCCAAATGGAACTCCAGAACAAGTCAAGTTCTATGACCTTGGTGTTCGTTCTGGGGCCCTTGGGTTGATGATAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGCGATTGAGCCAATTAGCCGTATTCTAGGAGGTCTCAGGTGGTGGTGGGGAATTGTGAACATCATATTCACCATTTGCATGGGATCCACCGTCGTTGTTACAAAGGTTGCTGAGCGCTGGAGGTCCGTTAACGGTTTGCGCCTTCCTCCCGCGAACGTTAGGGCCGGAGCTTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCACTTGCATCCATCTTTTCTTCAGAATCTGATGCGGGTCAAGGCCTCTCTTTGGGAATTCTCAACCTCTTCATTGTCATCCCACAGTTCATTGTGTCTGCAGTTAGTGGACCTTTAGATGCAGCTTTCGGAGGTGGAAACTTACCCGCATTCGTACTGGGTGGAATTGCTTCTTTTGCAAGCGCAATGTGCGCTATGTTTGTCCTTCCAGATCCACCACCTCAATCCGAAGTCTCCTTGACAATGGGGGCTGGCCATTGA 1488 47.51 MEHGDVVSKGMVSDPSSSYKKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIAAGAGFVAAAVFLIGFAADIGHAAGDQLAARTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSGTNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLLITTFAVFTVSEKQFERLEIDEEATPFFGKLLGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPNGTPEQVKFYDLGVRSGALGLMINSFVLGFSALAIEPISRILGGLRWWWGIVNIIFTICMGSTVVVTKVAERWRSVNGLRLPPANVRAGAFSIFAVLGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSAVSGPLDAAFGGGNLPAFVLGGIASFASAMCAMFVLPDPPPQSEVSLTMGAGH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19409123 19410702 - CrPI670011_11g014190.1 Cre11g1419 513164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1419 495 PANTHER SUGAR TRANSPORTER 14 477 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cre11g1419 495 NCBIfam sucrose/proton symporter 18 482 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Cre11g1419 495 SUPERFAMILY MFS general substrate transporter 21 484 IPR036259 -
Cre11g1419 495 CDD MFS_SLC45_SUC 31 476 - -
Cre11g1419 495 Pfam MFS/sugar transport protein 28 279 - -
Cre11g1419 495 Gene3D MFS general substrate transporter like domains 16 485 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1419 K15378 - - csv:116401998 892.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1137 Cre-Chr8:24580666 Cre11g1419 Cre-Chr11:19409123 4.70E-125 dispersed
Cre11g1419 Cre-Chr11:19409123 Cre11g1426 Cre-Chr11:20430132 4.80E-287 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre11g1419 . 14 492 Sucrose Transporter Gene Family AT1G22710 62.2 1.9e-174 609.4
Cre11g1426 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 4.3e-174 608.2
Cre08g1137 . 32 477 Sucrose Transporter Gene Family AT1G22710 50.9 7.0e-132 468.0
Cre11g1419 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.8 8.7e-172 600.5
Cre11g1426 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.8 8.7e-172 600.5
Cre08g1137 . 25 477 Sucrose Transporter Gene Family AT2G14670 51.6 2.4e-129 459.5
Cre11g1419 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 2.1e-143 506.1
Cre11g1426 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 2.1e-143 506.1
Cre01g0284 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.3e-182 635.6
Cre11g1419 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.3 8.1e-162 567.4
Cre11g1426 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.3 8.1e-162 567.4
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.4 2.3e-124 443.0
Cre11g1419 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.8 6.2e-170 594.3
Cre11g1426 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.8 6.2e-170 594.3
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.0 1.5e-126 450.3
Cre08g1137 . 18 478 Sucrose Transporter Gene Family AT1G09960 71.5 6.2e-197 684.1
Cre11g1419 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.4e-132 470.3
Cre11g1426 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.4e-132 470.3
Cre11g1419 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.6 1.7e-170 596.3
Cre11g1426 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 5.0e-170 594.7
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.6 4.0e-127 452.2
Cre11g1419 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.4e-164 575.9
Cre11g1426 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.4e-164 575.9
Cre11g1419 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.6 1.7e-170 596.3
Cre11g1426 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 5.0e-170 594.7
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.6 4.0e-127 452.2
Cre11g1419 . 14 492 Sucrose Transporter Gene Family AT1G22710 62.2 1.9e-174 609.4
Cre11g1426 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 4.3e-174 608.2
Cre08g1137 . 32 477 Sucrose Transporter Gene Family AT1G22710 50.9 7.0e-132 468.0
Cre01g0284 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.3e-182 635.6
Cre08g1137 . 18 478 Sucrose Transporter Gene Family AT1G09960 71.5 6.2e-197 684.1
Cre11g1419 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.4e-132 470.3
Cre11g1426 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.4e-132 470.3
Cre11g1419 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.4e-164 575.9
Cre11g1426 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.4e-164 575.9
Cre11g1419 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.8 6.2e-170 594.3
Cre11g1426 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.8 6.2e-170 594.3
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.0 1.5e-126 450.3
Cre11g1419 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 2.1e-143 506.1
Cre11g1426 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 2.1e-143 506.1
Cre11g1419 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.8 8.7e-172 600.5
Cre11g1426 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.8 8.7e-172 600.5
Cre08g1137 . 25 477 Sucrose Transporter Gene Family AT2G14670 51.6 2.4e-129 459.5
Cre11g1419 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.3 8.1e-162 567.4
Cre11g1426 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.3 8.1e-162 567.4
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.4 2.3e-124 443.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60