Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1455 ATGGCCACTGTTTCTTGCCAACCATCCGATTTGGCACCCCTTCTCGGCTCAGCAGCCACCGCGAATTCAACCGCCATAGCCGAGTTCCTATGCTCAAGATTCACCACCATAGCCACCACTTTCAGCTCCACCACCTACGCCGTCGACAACACATACCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTGGGGTTTGCCATGCTTTGTGCTGGCTCGGTCCGTGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTTGACGCCGCTGCCGGTGGCCTCTCCTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGTGCCCCCTCCAACTCCTTCATCGGCCGCCACTTTTTTGGCCTCTCCAATTTCCCCAACCCCTCTACTGATTATAGCTTCTTTCTCTATCAATGGGCATTTGCAATTGCTGCTGCAGGCATCACTAGTGGTTCCATTGCTGAGCGAACTCAATTTGTTGCCTATCTCATCTATTCTAGCATTCTTACTGGTTTCGTTTATCCCATAGTCTCCCATTGGTTTTGGTCTGCCGACGGGTGGGCTAGCCCAACCCGACCCAGTAACCTTATGTTCAATTCAGGGGCAATCGACTTTGCGGGATCAGGTGTGGTCCACATGGTCGGCGGCATAGCTGGTCTCTGGGGTGCCTTAATCGAAGGCCCTCGGATCGGCCGGTTTGATCGATCTGGCCGTTCTGTAGCCCTTCGCGGCCATAGTGCCTCCTTAGTAGTTCTTGGCTCTTTCCTCCTTTGGTTTGGGTGGTACGGGTTCAACCCAGGTTCATTTCTAACAATCTCCAAATCATACAATGATGGTCGTCCTTACTACGGACAATGGAGTGCCATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCCTTAACAACCCTCTTCACAAAACGCTTATTAGTTGGCCATTGGAACGTAATCGATGTATGCAATGGCCTATTAGGTGGATTTGCTGCTATCACGTCCGGTTGCGCCGTTGTTGAGCCATGGGCTGCGGTGATATGTGGATTTGTAGCATCCTGGGTGTTAACTGGCTTCAACAAGCTAGCTGAGAAGGTCAGCTACGATGACCCACTAGAGGCGGCGCAACTGCATGGCGGGTGTGGGGCGTGGGGCTTGATATTCACAGGATTATTTGCAAGAAAGGAGTATGTAGCAGAGGTTTACCAGGCCGGGCGTCCATATGGGTTGTTGATGGGTGGCGGAGGGAGGTTGCTGGCGGCACAGTTGGTGGAGATAATGGCGATAATTGGGTGGGTTTCTGTAACGATGGGGGGATTGTTTTATGGGCTAAAGAAGGTGAAATTGTTGAGAATATCAAGGGAAGATGAGATGGCTGGGATGGATTTGACAAGACATGGAGGCTTTGCTTATGTATATAATGATGAGGAGGATCCGTCTGCAAAGCCATCTGGATTTATGATGAGGAGAATTGAGCCTGCTAATGAAACTCCTCCTCAACAGAATTCTTCTTCAGGGATGGTAGCTGTTTGA 1536 51.11 MATVSCQPSDLAPLLGSAATANSTAIAEFLCSRFTTIATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSNFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSILTGFVYPIVSHWFWSADGWASPTRPSNLMFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLTGFNKLAEKVSYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVAEVYQAGRPYGLLMGGGGRLLAAQLVEIMAIIGWVSVTMGGLFYGLKKVKLLRISREDEMAGMDLTRHGGFAYVYNDEEDPSAKPSGFMMRRIEPANETPPQQNSSSGMVAV 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22013511 22015845 + CrPI670011_11g014550.1 Cre11g1455 513200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1455 511 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre11g1455 511 Gene3D Ammonium transporter AmtB like domains 30 487 IPR029020 -
Cre11g1455 511 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre11g1455 511 FunFam Ammonium transporter 30 487 - -
Cre11g1455 511 SUPERFAMILY Ammonium transporter 46 453 - -
Cre11g1455 511 PANTHER AMMONIUM TRANSPORTER 19 481 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cre11g1455 511 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1524 Cre-Chr6:9972519 Cre11g1455 Cre-Chr11:22013511 1.70E-207 dispersed
Cre07g0507 Cre-Chr7:2853303 Cre11g1455 Cre-Chr11:22013511 7.10E-211 dispersed
Cre11g1455 Cre-Chr11:22013511 Cre11g1458 Cre-Chr11:22149798 3.40E-264 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1455 K03320 - csv:101222356 928.317