Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1458 ATGGCCACTGTTTCTTGCCAACCTTCCGATTTGGCGCCACTGCTCAGCTCCACAGGCACCACCAATTCCACCGCCATAGCTGAGTTCCTATGCTCAAGATTCACCACCATAGCCACCACTTTCAGCTCCACCACCTACGCCGTCGACAACACATACCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTGGGGTTTGCCATGCTTTGTGCTGGCTCGGTCCGTGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTTGACGCCGCTGCCGGTGGCCTCTCCTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGTGCCCCCTCCAACTCCTTCATCGGCCGCCACTTTTTTGACCTCTCCAGTGTCCCTAACCCCTCCACTGATTATAGCTTCTTTCTCTATCAATGGGCTTTTGCTATTGCTGCTGCAGGCATCACTAGTGGCTCCATAGCTGAGCGAACTCAATTCGTCGCCTACCTCATCTACTCAACTATTCTAACTGGCTTCATCTATCCTATAGTCTCCCACTGGTTCTGGTCTGCTGACGGGTGGGCCAGCCCAACCCGTCCCAACAACCTCCTATTCAACTCAGGTGCAATCGACTTCGCGGGGTCAGGTGTGGTCCACATGGTTGGTGGCATAGCTGGCCTATGGGGAGCTTTAATCGAAGGCCCTCGAATCGGCCGGTTTGATCGATCTGGCCGATCTGTTGCCCTTCGCGGCCACAGTGCCTCCTTAGTGGTTCTCGGCTCCTTCCTCCTCTGGTTCGGCTGGTACGGATTTAACTCCGGCTCATTCCTAACAATCTCCAAATCCTACAATGACGGTCGTCCTTACTACGGCCAATGGAGCGCCATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCCTTAACAACCCTCTTTGCAAAACGCCTATTAGTTGGGCATTGGAATGTAATCGATGTGTGCAACGGCCTATTGGGCGGGTTCGCCGCCATCACATCCGGTTGTGCTGTGGTGGAGCCATGGGCGGCAGTGATATGTGGTTTCGTAGCATCATGGGTGTTAATTGGGTTAAACAAGCTAGCCGAGAGGGTGAGCTATGACGACCCACTAGAGGCGGCACAATTGCATGGCGGGTGTGGCGCGTGGGGTTTGATATTCACAGGATTATTTGCGACGAAGAAATACGTCGGTGAGGTATATCAAGCCGGGCGGCCGTACGGATTGTTGATGGGCGGTGGAGGGAGGTTGCTGGCAGCGCAGGTGGTGGAGATAGTAGCGATAGTCGGTTGGGTGTCTGTGACAATGGGGGGATTGTTTTATGGGCTGAAGAAAGGAAAATTATTAAGAATATCAAGAGAGGATGAAATGGCAGGGATGGATTTGACAAGGCATGGGGGATTTGCTTATGTATATAATGATGAGGAAGATCTATCAGAGAAGCCTTCAGGGTTTATGATGAGAAGGATTGAACCTACCGATGCTAGTTCTCCTGAGGAGCATACTTCTGCGATCGGGGCTGTTTGA 1533 52.71 MATVSCQPSDLAPLLSSTGTTNSTAIAEFLCSRFTTIATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFDLSSVPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTILTGFIYPIVSHWFWSADGWASPTRPNNLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNSGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFAKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLIGLNKLAERVSYDDPLEAAQLHGGCGAWGLIFTGLFATKKYVGEVYQAGRPYGLLMGGGGRLLAAQVVEIVAIVGWVSVTMGGLFYGLKKGKLLRISREDEMAGMDLTRHGGFAYVYNDEEDLSEKPSGFMMRRIEPTDASSPEEHTSAIGAV 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22149798 22151828 + CrPI670011_11g014580.1 Cre11g1458 513203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1458 510 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre11g1458 510 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre11g1458 510 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre11g1458 510 Gene3D Ammonium transporter AmtB like domains 30 487 IPR029020 -
Cre11g1458 510 PANTHER AMMONIUM TRANSPORTER 20 478 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cre11g1458 510 FunFam Ammonium transporter 30 487 - -
Cre11g1458 510 SUPERFAMILY Ammonium transporter 46 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1455 Cre-Chr11:22013511 Cre11g1458 Cre-Chr11:22149798 3.40E-264 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1458 K03320 - csv:101217871 927.161