Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1512 GAAAACCATGGAAAAAGGGCATTTAATCTGTTAGATGTGTTGGTACTGGATACTGTTTTTCTTACATATGACATAGTTGCTCTAATTTCAAGTGATATGGGGACAGAGCTTATGAGCGTCTGCGTTGAAGAAGATAGTGATGACTTTCCGTCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTAGGGAAGGTGCACAATCATGAAAAGCAAGACAGTTGTGTCCCTGTTAGTTTGCCAACTGTCTCTGAATCACAACCAGTCAAAGTGGGAAGTGAGGTTGAAGGTGGCAATGTTGCAAAAGTTACAAGGTCCCTACGGCGTAAACCATGTGTAAACTATAGACAATATGATTACTGCTCTGATGACGAGATTGATAGTACTAAGTGTCTAGATCAGAATTTTTCTTCAAGGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGAACCTTGAGGATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCAAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCGCCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGGGGTCTAAATTTGCAACTCGTGTCCAAAGAATTGATAAGCTTCAAAATCGAGATTCAATAAGAAAGAACTCTAGGGTTTGCAGTCAGATGAGAAGGAAAAGGAGGAGGAGTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGCAAAATTGGAGATGCTGGCCCTGTTGAGGCGGAAAGATTTGGATTTGATCCTGGCCCAGATTTTACTTTAGCATTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCAACGATACTACAAAGGGATGTAATCCATCTATGCTGCAAGAGAACAAACATGAACCATCTTTAGAGGCTATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGCTTTCCAAAGATTTGCTGTCAAGAGGGCTCTACATTGGATGAAGAGAAATATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGTAGCAATATATCTGGAGTCTTGGTACCATGGCTTTATATCGGGATGTGCTTTTCGTCTTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGAAAGTTAGAAGAGGCTATGAGAAAACATTTGCCTAACCTCTTTCAAGAACAACCTGATTTACTCCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAAATGGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAAGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAAGGACGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGAAAATTTAAGATGGAATAATGTTTGTGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTGTTGAGATGGAGTGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCCCAGGCAATGAAGATGGAGAGCAACTTCGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCCAAGCAGTTGTGCTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATCAGTGAATTGAACATACTTCTTGAAGCATTGGAGGGAAAATTAAGTGCAGTGTACAGGTGGGCTAGGCAGGATCTCGGTCTGGCACTCAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACCAAGTCCCTTGGGAATCCTCAATGGAAAGAATTCTTGAGGCAATCTTCATTATTACCAACTCTAACCGCTTTTGACAGCCCTTCTCATCATGCCAAAAAGTTATCTGAAGTTACTGCTTCCTTTCCAGAAGTTAAGAAGGTAATTTCCACAGTTGACGGATCTGGGAAGGAAATTGAGCAGCAAAATCATCAAATTGAGGTGAAAAAAGAAAACCATGACCTTGTGGCAACCAATTCAAGACATGCAGATTCACAGTCCTGTAAGGAAGATACAAATGCTCGGAATTTAGTAGAAGTGAAAAATACAACGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGCTGGGAAATTCAGACCGGTTCACTGAGATTGATTCCAAGGCCAGCCTGTGCAACTACGATGAAAATGCCATTTTGCACACTCCCGCGACTGATGCAACGGCCATGGGAGAAAAGGAGGTCAACTTGTTGACTGAAAAAAGATTGAATAGTTGCCAATCGAGCATTGTGCCTTTAAATAGTAAACAGTTTCAAAACATTAACTTATCAGTTAGAGATGCAGCTAATGCTATTCAGAACACCTCAGATGCAGGATTAAGTCATAGTAATAGAGTATTTCCAGCGTCAACAGACACTGATTCTCAAAAACCACAGACATGTGGCTCTGGAAAATTGAATGAGGGTAAGCATGGAAATGTGGGAACAAGTGCTACCTCTTGTGTGTTAGACCCTAGTAGAACTACTGCAAATTTATCTTGCAATCAAGCTAATATGGATAGATTCATGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATTAACTGCAATGTTGAGCCTTTAGAATATGGAATCGTGCTCTCAGGGAAGTCTTGGTCAAACTGTCAGGCCATTTTCCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAGTGTTTTAGATCCGTCAACTTTGTGTTACTATGTTTCTGAAATTCTTGATGCTGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAGGAAATTGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTAGAAATGTTCGGATTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCAAGTACATAGTCCACAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACCGAAAGGAACCACGGGGTTGATTCTAGGCCAGCTGGAGTTGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGTGTGTTAGCTCGACTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA 3798 41.94 ENHGKRAFNLLDVLVLDTVFLTYDIVALISSDMGTELMSVCVEEDSDDFPSVPPGFESYISFSLGKVHNHEKQDSCVPVSLPTVSESQPVKVGSEVEGGNVAKVTRSLRRKPCVNYRQYDYCSDDEIDSTKCLDQNFSSRPSLSKGVIRGCPQCNNCQKVVARWRPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFATRVQRIDKLQNRDSIRKNSRVCSQMRRKRRRSNRKGVDVTTLNGKIGDAGPVEAERFGFDPGPDFTLALFQKYADDFKSQYFSKPLNDTTKGCNPSMLQENKHEPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKICCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKMEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLENLRWNNVCGKDGILARAFKTRVEMECARRNLPCSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSLGNPQWKEFLRQSSLLPTLTAFDSPSHHAKKLSEVTASFPEVKKVISTVDGSGKEIEQQNHQIEVKKENHDLVATNSRHADSQSCKEDTNARNLVEVKNTTDKMCPENVILLSDDEGDEHKKTISNGLAESSSVKQLGNSDRFTEIDSKASLCNYDENAILHTPATDATAMGEKEVNLLTEKRLNSCQSSIVPLNSKQFQNINLSVRDAANAIQNTSDAGLSHSNRVFPASTDTDSQKPQTCGSGKLNEGKHGNVGTSATSCVLDPSRTTANLSCNQANMDRFMRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNCQAIFPKGFKSRVKFISVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNHGVDSRPAGVDIVLRGLLKKANLEELNSLYTLLNDNRPTVDQGVLARLLNEEIQSHRR 1265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23612276 23624381 + CrPI670011_11g015120.1 Cre11g1512 513257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1512 1265 ProSiteProfiles JmjC domain profile. 390 556 IPR003347 -
Cre11g1512 1265 SUPERFAMILY Clavaminate synthase-like 391 583 - -
Cre11g1512 1265 MobiDBLite consensus disorder prediction 1182 1211 - -
Cre11g1512 1265 SMART cupin_9 390 556 IPR003347 -
Cre11g1512 1265 Pfam jmjN domain 178 211 IPR003349 -
Cre11g1512 1265 Gene3D - 1037 1173 - -
Cre11g1512 1265 MobiDBLite consensus disorder prediction 955 987 - -
Cre11g1512 1265 Pfam F/Y rich C-terminus 1091 1175 IPR003889 GO:0005634(InterPro)
Cre11g1512 1265 ProSiteProfiles JmjN domain profile. 177 218 IPR003349 -
Cre11g1512 1265 PANTHER LYSINE-SPECIFIC DEMETHYLASE 158 916 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cre11g1512 1265 SMART JmjN_1 176 217 IPR003349 -
Cre11g1512 1265 ProSiteProfiles FYR domain FYRC motif profile. 1089 1179 IPR003889 GO:0005634(InterPro)
Cre11g1512 1265 MobiDBLite consensus disorder prediction 955 979 - -
Cre11g1512 1265 MobiDBLite consensus disorder prediction 1183 1209 - -
Cre11g1512 1265 Gene3D Cupin 162 540 - -
Cre11g1512 1265 SMART fyrn_3 1043 1087 IPR003888 GO:0005634(InterPro)
Cre11g1512 1265 Pfam F/Y-rich N-terminus 1044 1086 IPR003888 GO:0005634(InterPro)
Cre11g1512 1265 Pfam JmjC domain, hydroxylase 423 539 IPR003347 -
Cre11g1512 1265 Pfam C5HC2 zinc finger 646 697 IPR004198 -
Cre11g1512 1265 SMART fyrc_3 1093 1187 IPR003889 GO:0005634(InterPro)
Cre11g1512 1265 ProSiteProfiles FYR domain FYRN motif profile. 1029 1087 IPR003888 GO:0005634(InterPro)
Cre11g1512 1265 FunFam Putative lysine-specific demethylase JMJ16 1035 1173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0761 Cre-Chr9:7451634 Cre11g1512 Cre-Chr11:23612276 8.10E-177 dispersed
Cre09g1113 Cre-Chr9:11719674 Cre11g1512 Cre-Chr11:23612276 3.40E-53 dispersed
Cre09g1646 Cre-Chr9:33962020 Cre11g1512 Cre-Chr11:23612276 1.80E-234 dispersed
Cre09g2244 Cre-Chr9:41612946 Cre11g1512 Cre-Chr11:23612276 7.90E-93 dispersed
Cre11g1512 Cre-Chr11:23612276 Cre10g0393 Cre-Chr10:2764424 2.00E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54696 PF02373 JmjC 1.80E-44 CL0029 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1512 K11446 - csv:101208186 2298.86