Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1551 ATGGCATCGAGTTCCTCGAATTCGCCCTGTGCAGCTTGCAAATTTCTCCGGCGAAAATGCCAACCGGAATGTGTTTTTGCGCCTTATTTTCCGCCGGATCAGCCACAGAAATTCGCCAATGTTCATAAGGTATTCGGAGCCAGCAATGTCACAAAACTTCTCAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTATGAAGCCGATATGCGTCTTCGAGACCCTGTCTATGGCTGTGTTGGCGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATATCAAAACCTAGGCATCGGAAACCACGCCGCCCTGATTTCGCCGCCTTCCACTGTTTCCACCGTCGCTCATGGACAGCGGAACCACCAGCCGGCGTTCAATTTTGCTCGAGATCAACCGCATAGCCTCTATCACGATCAATCTTTTCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGAAGCTTCGACGGCGGTAGCAACTATGACGGACTTTTGGCTGTCAATGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG 657 51.9 MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSTVSTVAHGQRNHQPAFNFARDQPHSLYHDQSFPRDQQQQQMMLRRSFDGGSNYDGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24820525 24821181 - CrPI670011_11g015510.1 Cre11g1551 513296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1551 218 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Cre11g1551 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 155 - -
Cre11g1551 218 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0532 Cre-Chr1:4618826 Cre11g1551 Cre-Chr11:24820525 2.30E-44 dispersed
Cre01g0615 Cre-Chr1:5414155 Cre11g1551 Cre-Chr11:24820525 3.90E-26 dispersed
Cre01g1243 Cre-Chr1:25632238 Cre11g1551 Cre-Chr11:24820525 1.10E-40 dispersed
Cre02g1647 Cre-Chr2:29395269 Cre11g1551 Cre-Chr11:24820525 1.40E-45 dispersed
Cre04g2098 Cre-Chr4:38216030 Cre11g1551 Cre-Chr11:24820525 8.30E-31 dispersed
Cre09g0062 Cre-Chr9:890445 Cre11g1551 Cre-Chr11:24820525 3.00E-23 dispersed
Cre09g1636 Cre-Chr9:33675716 Cre11g1551 Cre-Chr11:24820525 2.40E-36 dispersed
Cre10g1536 Cre-Chr10:29334984 Cre11g1551 Cre-Chr11:24820525 1.40E-45 dispersed
Cre10g1714 Cre-Chr10:31355825 Cre11g1551 Cre-Chr11:24820525 2.40E-23 dispersed
Cre11g1062 Cre-Chr11:8056520 Cre11g1551 Cre-Chr11:24820525 6.10E-35 dispersed
Cre11g1088 Cre-Chr11:8336297 Cre11g1551 Cre-Chr11:24820525 4.80E-37 dispersed
Cre11g1551 Cre-Chr11:24820525 Cre06g2588 Cre-Chr6:33590516 5.60E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54697 PF03195 LOB 4.10E-43 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1551 - - - 0.0