Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1556 ATGTCTATTGACAGCTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTAGGATCAAATGAGTCTCATACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACATAGTGTTAACCGCCGCGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCCCGAGCTTTATTTGATAGTAATACACCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACACTTGATTTAAGGAAGCTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGGAAACTCTACAGAGGTACTTATGATGGTGAAGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAGTTAATGGAGCAGCAATATCAGCAGGAGGTGATGATGCTTGCTACACTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCGATGGTTTGGTGCATTGTTACTGAGTATGCGAAGGGCGGTTCAGTTAGGCAGTTCTTGATGAAGCGACAAAGTCGTTCTGTCCCACTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGGTTGATTCATAGGGACTTGAAATCGGACAACCTTCTGATTTTTGCAGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAAGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACCTCTATAGCTTTGGTATCGTTCTGTGGGAGCTCATAACTGGAATGCTTCCATTCCAGAACATGACAGCTGTTCAGGCCGCCTTTGCAGTCGTAAACAAAGGAGTCCGTCCTATCATTCCCAATGATTGCTTACCTGTATTGAGCGACATCATGACCCGGTGCTGGGACGCCAACCCTGATGTTAGGCCGTCATTTACCGAGGTGGTCAGAATGCTTGAGAATGCGCAGACTGAGATCATGACGACAGTTCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA 1140 47.02 MSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25129522 25137350 + CrPI670011_11g015560.1 Cre11g1556 513301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1556 379 Pfam Protein tyrosine and serine/threonine kinase 99 352 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1556 379 Gene3D Transferase(Phosphotransferase) domain 1 181 374 - -
Cre11g1556 379 ProSiteProfiles Protein kinase domain profile. 98 359 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1556 379 CDD STKc_MAP3K-like 105 352 - -
Cre11g1556 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1556 379 FunFam Serine/threonine-protein kinase isoform 1 88 180 - -
Cre11g1556 379 MobiDBLite consensus disorder prediction 1 33 - -
Cre11g1556 379 Gene3D Phosphorylase Kinase; domain 1 87 180 - -
Cre11g1556 379 SMART serkin_6 98 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1556 379 PRINTS Tyrosine kinase catalytic domain signature 176 189 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1556 379 PRINTS Tyrosine kinase catalytic domain signature 323 345 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1556 379 PRINTS Tyrosine kinase catalytic domain signature 260 270 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1556 379 PRINTS Tyrosine kinase catalytic domain signature 214 232 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1556 379 PRINTS Tyrosine kinase catalytic domain signature 279 301 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1556 379 SUPERFAMILY Protein kinase-like (PK-like) 83 352 IPR011009 -
Cre11g1556 379 FunFam serine/threonine-protein kinase HT1 181 374 - -
Cre11g1556 379 PANTHER SERINE-THREONINE PROTEIN KINASE 49 354 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1918 Cre-Chr4:36749287 Cre11g1556 Cre-Chr11:25129522 9.90E-79 dispersed
Cre10g0303 Cre-Chr10:1911369 Cre11g1556 Cre-Chr11:25129522 3.00E-70 dispersed
Cre10g1568 Cre-Chr10:29708353 Cre11g1556 Cre-Chr11:25129522 4.10E-60 dispersed
Cre10g2370 Cre-Chr10:37805218 Cre11g1556 Cre-Chr11:25129522 1.80E-64 dispersed
Cre11g1556 Cre-Chr11:25129522 Cre05g0607 Cre-Chr5:5423583 2.40E-60 dispersed
Cre11g1556 Cre-Chr11:25129522 Cre04g1775 Cre-Chr4:35707722 1.10E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64554 PF07714 PK_Tyr_Ser-Thr 2.30E-65 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1556 - - - 0.0