Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g1556 | ATGTCTATTGACAGCTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTAGGATCAAATGAGTCTCATACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACATAGTGTTAACCGCCGCGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCCCGAGCTTTATTTGATAGTAATACACCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACACTTGATTTAAGGAAGCTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGGAAACTCTACAGAGGTACTTATGATGGTGAAGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAGTTAATGGAGCAGCAATATCAGCAGGAGGTGATGATGCTTGCTACACTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCGATGGTTTGGTGCATTGTTACTGAGTATGCGAAGGGCGGTTCAGTTAGGCAGTTCTTGATGAAGCGACAAAGTCGTTCTGTCCCACTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGGTTGATTCATAGGGACTTGAAATCGGACAACCTTCTGATTTTTGCAGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAAGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACCTCTATAGCTTTGGTATCGTTCTGTGGGAGCTCATAACTGGAATGCTTCCATTCCAGAACATGACAGCTGTTCAGGCCGCCTTTGCAGTCGTAAACAAAGGAGTCCGTCCTATCATTCCCAATGATTGCTTACCTGTATTGAGCGACATCATGACCCGGTGCTGGGACGCCAACCCTGATGTTAGGCCGTCATTTACCGAGGTGGTCAGAATGCTTGAGAATGCGCAGACTGAGATCATGACGACAGTTCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA | 1140 | 47.02 | MSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25129522 | 25137350 | + | CrPI670011_11g015560.1 | Cre11g1556 | 513301 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g1556 | 379 | Pfam | Protein tyrosine and serine/threonine kinase | 99 | 352 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre11g1556 | 379 | Gene3D | Transferase(Phosphotransferase) domain 1 | 181 | 374 | - | - | |
Cre11g1556 | 379 | ProSiteProfiles | Protein kinase domain profile. | 98 | 359 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre11g1556 | 379 | CDD | STKc_MAP3K-like | 105 | 352 | - | - | |
Cre11g1556 | 379 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 220 | 232 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre11g1556 | 379 | FunFam | Serine/threonine-protein kinase isoform 1 | 88 | 180 | - | - | |
Cre11g1556 | 379 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cre11g1556 | 379 | Gene3D | Phosphorylase Kinase; domain 1 | 87 | 180 | - | - | |
Cre11g1556 | 379 | SMART | serkin_6 | 98 | 360 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre11g1556 | 379 | PRINTS | Tyrosine kinase catalytic domain signature | 176 | 189 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre11g1556 | 379 | PRINTS | Tyrosine kinase catalytic domain signature | 323 | 345 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre11g1556 | 379 | PRINTS | Tyrosine kinase catalytic domain signature | 260 | 270 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre11g1556 | 379 | PRINTS | Tyrosine kinase catalytic domain signature | 214 | 232 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre11g1556 | 379 | PRINTS | Tyrosine kinase catalytic domain signature | 279 | 301 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre11g1556 | 379 | SUPERFAMILY | Protein kinase-like (PK-like) | 83 | 352 | IPR011009 | - | |
Cre11g1556 | 379 | FunFam | serine/threonine-protein kinase HT1 | 181 | 374 | - | - | |
Cre11g1556 | 379 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 49 | 354 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1918 | Cre-Chr4:36749287 | Cre11g1556 | Cre-Chr11:25129522 | 9.90E-79 | dispersed | |
Cre10g0303 | Cre-Chr10:1911369 | Cre11g1556 | Cre-Chr11:25129522 | 3.00E-70 | dispersed | |
Cre10g1568 | Cre-Chr10:29708353 | Cre11g1556 | Cre-Chr11:25129522 | 4.10E-60 | dispersed | |
Cre10g2370 | Cre-Chr10:37805218 | Cre11g1556 | Cre-Chr11:25129522 | 1.80E-64 | dispersed | |
Cre11g1556 | Cre-Chr11:25129522 | Cre05g0607 | Cre-Chr5:5423583 | 2.40E-60 | dispersed | |
Cre11g1556 | Cre-Chr11:25129522 | Cre04g1775 | Cre-Chr4:35707722 | 1.10E-78 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64554 | PF07714 | PK_Tyr_Ser-Thr | 2.30E-65 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g1556 | - | - | - | 0.0 |