Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1562 ATGGAAGCCAGCGCTGGACTTGTCGCTGGGTCTCACAATCGTAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAGCCGTTGAAGAATTTGGACGGTCAAGTTTGTGAGATCTGTGGTGACGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCAGTTTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAAAATTGTCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGGAGTCCGAGGGTTGAGGGAGATGACGATGAAGAAGACATAGATGACATTGAACATGAGTTCAACATTGATGATGAGAGGAACAACCATAGCCATCTGGCAGAAGCTATGCTTCATGGCAAGATGAGCTATGGTAGAGGCCCAGATGATGAAGAAAATGCACAATACGGAAGAACACAGACAGCAAATGGTGAGCTTCCTTTATCTTCTCAAGGTTATGGAGAGCAGATGTTATCTTCTTCATTGCACAAACGTGTACATCCATATCCAGTTTCTGAACCAGGGAGTACAAGATGGGATGAAAAGAAAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATGATTGATGCAGCCAGACAACCACTATCAAGGAAGGTACCAATAGCATCAAGCAAAATTAATCCGTACCGGATGGTTATTGTAGCCCGGCTCGTTATTCTCGCCTTCTTCCTTCGATACCGGATTCTAAATCCAGTGCATGACGCATTGGGCTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTATCCCTAAGGTATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCGGTCGACATCTTTGTTAGTACTGTAGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGACAAGATTTCATGCTACGTTTCGGACGATGGAGCTTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTGCGAGGAAATGGGTGCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTCTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCGACATTTGTGAAAGAGCGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCATGAAAGTTCCAGCAGAAGGATGGATAATGCAGGATGGAACACCGTGGCCAGGCAACAACACCAAAGATCATCCTGGTATGATCCAAGTCTTTCTGGGTCACAGTGGAGGCCTTGATGCAGAAGGAAATGAACTCCCCCGCCTAGTTTATGTGTCTCGTGAGAAAAGACCAGGTTTCCAGCATCACAAGAAAGCCGGTGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACGAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAAGCCATGTGTTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTACAATTTCCACAAAGATTTGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTCTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGACCTGTATATGTCGGCACAGGGTGTGTCTTTAGGAGGCAAGCTTTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGTGATTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTCAAGCACTCTAAAAGTGGGGTAGATGGAGATGTTGCAGTGCTGGAAGATGATAAGGAGCTACTGATGTCACAAATGAATTTTGAAAAGAAATTTGGACAGTCATCAATTTTTGTTACCTCTACTTTGATGGAAGAAGGTGGTGTTCCGCCCTCCTCGAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACCGAGTTGGGCTGGATTTACGGATCTATCACAGAAGATATTCTAACAGGTTTTAAAATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCAAAGAGACCTGCGTTTAAGGGTACAGCTCCCATCAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCACTCGGGTCTATTGAAATCTTTTTCAGCAACCACTGCCCCGTTTGGTATGGTCATAAGGGCGGGAAGCTAAAGTGGCTTGAGAGATTTGCATATGTCAACACAACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCAATCTGCCTGCTCACGGATAAGTTTATCATGCCACCGATAAGCACTTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCCATTTTTGCCACGGGTATTCTTGAGCTTAAATGGAGTGGAGTAAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTATTGAAGGTATTGGCTGGAATTGATACTAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGACTTTGGAGAATTATATGCCTTCAAATGGACAACCCTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTAGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAACGGGTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTCTGATGGGCAGACAAAACCGCACACCAACTATAGTCGTCATATGGTCTGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCATTTGTGATGAAAACAAAGGGACCTGATACTAAGAAATGTGGACTAAATTGCTGA 3099 44.21 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDERNNHSHLAEAMLHGKMSYGRGPDDEENAQYGRTQTANGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPGSTRWDEKKEEGWKDRMDDWKLQQGNLGPEPDDANDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAMKVPAEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKHSKSGVDGDVAVLEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGHKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKKCGLNC 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25292509 25296960 - CrPI670011_11g015620.1 Cre11g1562 513307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1562 1032 CDD mRING-HC-C4C4_CesA 35 85 - -
Cre11g1562 1032 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Cre11g1562 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Cre11g1562 1032 FunFam Cellulose synthase 444 618 - -
Cre11g1562 1032 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 432 618 IPR029044 -
Cre11g1562 1032 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Cre11g1562 1032 FunFam Cellulose synthase 19 110 - -
Cre11g1562 1032 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 233 1001 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cre11g1562 1032 SUPERFAMILY Nucleotide-diphospho-sugar transferases 340 856 IPR029044 -
Cre11g1562 1032 SUPERFAMILY RING/U-box 21 107 - -
Cre11g1562 1032 Pfam Cellulose synthase 327 1026 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1228 Cre-Chr2:12407676 Cre11g1562 Cre-Chr11:25292509 2.20E-118 dispersed
Cre02g1229 Cre-Chr2:12487990 Cre11g1562 Cre-Chr11:25292509 3.00E-115 dispersed
Cre06g0915 Cre-Chr6:2565054 Cre11g1562 Cre-Chr11:25292509 0.00E+00 dispersed
Cre08g0188 Cre-Chr8:4180078 Cre11g1562 Cre-Chr11:25292509 0.00E+00 dispersed
Cre09g0394 Cre-Chr9:3874027 Cre11g1562 Cre-Chr11:25292509 0.00E+00 dispersed
Cre10g1275 Cre-Chr10:25879116 Cre11g1562 Cre-Chr11:25292509 7.40E-246 dispersed
Cre10g1276 Cre-Chr10:25892913 Cre11g1562 Cre-Chr11:25292509 1.20E-218 dispersed
Cre11g1562 Cre-Chr11:25292509 Cre02g1225 Cre-Chr2:12234652 5.80E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1562 K10999 - csv:101214842 2081.6