Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1575 ATGATCTCAACCATCGCCTTCTTGCTTCTTTGTCACAAAAATACGGCTGTCTTCCGACTCAAACTTGGTTACAAGAATCTAGTTGTGGTGTCTGATGCCGAGCTTGCTAACCAAGTCCTCCATGCTCAAGGTGTGGAGTTTGGATCTCGTCCACGAAATGTTGTCTTCGACATTTTCACTGGTAATGGACAAGATATGGTGTTCACCGTTTATGGCAACCATTGGCGTAAAATGCGTAGAATTATGACACTGCCATTTTTTACAAACAAAGTTGTGCATAACTACAGTGGCATGTGGGAGGAAGAAATGGATTTAGTTGTTCATGATCTTATGAATAACCCAAAGGTAAAATCTGAAGGGTTAGTCATAAGAAAGCGTTTACAACTGATGTTGTACAATATCATGTATAGAATGATGTTTGATACTAAATTTGAATCTCAAGATGATCCTTTGTTTATTGAGGCAACTAAATTCAATTTTGAAAGAAGTCGATTGGCACAAAGTTTTGAATACAATTATGGAGATTTCATTCGTCTGCTTAGACCCTTTTTGAGGGGTTACTTGAACAAATGCAAGGATTTGCAAAGCAGGAGGTTGGCATTTTTCAACAATAACTATGTTGAGAAAAGAAGAAAAATTATGGCTGCCAATGGAGACAAGCACAGGATAAGTTGTGCTATGGATCATATTATAGATGCTCAGCTAAAAGGAGAAATTAGTGAAGAGAATGTGATATACATTGTGGAGAATATTAATGTTGCAGCAATAGAGACGACACTTTGGTCGATGGAGTGGGCAATAGCTGAGTTGGTAAACCATCCAACTGTACAACAAAATATCCGAGAGGAAATCTCAACCATCCTAAAAGGAAAGGAAGTCACAGAATCTAACTTACATGAGCTGCCATATCTGCAAGCCACAGTGAAAGAGACATTGAGACTGCACACACCAATACCTTTATTAGTTCCACATATGAACTTGGAAGAAGCCAAGCTTGGAGGCTACACAATTCCAAAAGAGTCTAAGGTGGTGGTAAATGCATGGTGGTTGGCCAATAACCCAGCATGGTGGAAAAATCCAGAGGAATTCAGGCCAGAGAGGTTCCTTCAAGAAGAAAGTAGCACAGAAGCTGTAGCAGGAGGCAAAGTTGACTTCCGATTCTTACCATTTGGTGTTGGAAGGAGAAGTTGCCCTGGAATTGTTTTGGCGCTGCCAATCTTGGGATTGATCATTGCTAAGTTGGTGACCAATTTTGAAATGAAGCCTCCAATTGGCATGGAGAAGATTGATGTGAGCGAAAGAGGAGGACAATTCAGTTTACATATTGCCAACCACTCAACTGTGGCATTCAAACCTATAACTGCTTAG 1368 40.13 MISTIAFLLLCHKNTAVFRLKLGYKNLVVVSDAELANQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGNHWRKMRRIMTLPFFTNKVVHNYSGMWEEEMDLVVHDLMNNPKVKSEGLVIRKRLQLMLYNIMYRMMFDTKFESQDDPLFIEATKFNFERSRLAQSFEYNYGDFIRLLRPFLRGYLNKCKDLQSRRLAFFNNNYVEKRRKIMAANGDKHRISCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPTVQQNIREEISTILKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPAWWKNPEEFRPERFLQEESSTEAVAGGKVDFRFLPFGVGRRSCPGIVLALPILGLIIAKLVTNFEMKPPIGMEKIDVSERGGQFSLHIANHSTVAFKPITA 455
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 25483812 25485323 + CrPI670011_11g015750.1 Cre11g1575 513320
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1575 455 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 10 454 - GO:0004497(PANTHER)
Cre11g1575 455 Pfam Cytochrome P450 14 443 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 SUPERFAMILY Cytochrome P450 10 435 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 PRINTS E-class P450 group I signature 130 148 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 PRINTS E-class P450 group I signature 305 323 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 PRINTS E-class P450 group I signature 346 370 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 PRINTS E-class P450 group I signature 387 397 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 PRINTS E-class P450 group I signature 397 420 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 PRINTS E-class P450 group I signature 35 56 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 PRINTS E-class P450 group I signature 263 289 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 PRINTS E-class P450 group I signature 11 30 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 PRINTS E-class P450 group I signature 243 260 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 390 399 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cre11g1575 455 Gene3D Cytochrome P450 4 452 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 PRINTS P450 superfamily signature 306 317 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 PRINTS P450 superfamily signature 388 397 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cre11g1575 455 PRINTS P450 superfamily signature 254 271 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1572 Cre-Chr11:25465654 Cre11g1575 Cre-Chr11:25483812 6.20E-232 dispersed
Cre11g1573 Cre-Chr11:25477366 Cre11g1575 Cre-Chr11:25483812 1.80E-68 dispersed
Cre11g1575 Cre-Chr11:25483812 Cre10g1760 Cre-Chr10:31998110 1.10E-56 dispersed
Cre11g1574 Cre-Chr11:25478294 Cre11g1575 Cre-Chr11:25483812 1.80E-58 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1575 K00487 - csv:101205775 845.114