Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1591 ATGGATCCCCCAACCTCCAACCGTAGTCGTAGAACTACCAACAAATCTGATCTCTACTCCACAGTTGTCATCCATTCCAATTCTGATTCCGACTCCGATAACAATCCCGACGATCGGAATCTTCACCGTCGACGAAGGCCGCCGAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGTGACGACGACGATGACGATGATTCCTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGTGGCGGAGCTCCAATTGACTACGAGGATGACCATGCTTTTGATTTCGATCACGATACTGAAGACTTCGGTACCATGATCGTCAAGACGGATAGGAATCGTCCTCGAAATCGCTCTGTGTCTTCATCAGTTTCGACCATGCCCCGGAAGAGAGCTGGCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTAATGGGTATTCTACGTTTGTGGTGAGGTCCACGGCCAGGTCGCGGAACAGGGAATCGGTTAGTGGGACTGTTGTTCGAAGGACCGCTGGTAGTCGCAGTGGTTCCAGAGATGGAGGCGGAGGACTTGAGGGGTCCACGATGGGCAGAGCGGTCGCGAGTATGCAAGGTATGGGAGAGTTAGGGTTCGGGAAGCAGAGGAAGGGGAATGGATCACCGAGGAGTGAGGAAGGCGGTGGTCGGATACGCAGTAAGGTATCCTCGAGTTCGATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGGTCCTATGGGGCTGTATATAAAGCAAGGGATATTAAGACCTCTGAGCTGGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCGAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACCGAGGAAGCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGCGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATATGATGGAAAGGTGGATGTGTGGGCTCTTGGTGTCTCTGCTATTGAAATGGCCGAGGGGCTTCCTCCAAGATCGGCAGTGCATCCAATGAGGGTTTTATTCATGATATCGATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGCTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGGACTTTAATGGCTCAGCAAGCACATAGTATTGCTCCAGATGCATCTGGAGATGGTACAATAGTAGCTGCAAATTTGAATCAAGAGTATGGAGATACTGTTCCTTCAAAGCCTCAGAATAGTGGACTTCAGGTAGCAAATGAAATGGCAGCTGGTGGCACTTGGAGGAAGCAAGAGCAATCGGGCGCTGAACTTGTAGCAGAAG 1795 48.19 MDPPTSNRSRRTTNKSDLYSTVVIHSNSDSDSDNNPDDRNLHRRRRPPSEGQDLYATMLYKDVDKPRDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFGTMIVKTDRNRPRNRSVSSSVSTMPRKRAGSEEGDDSEEDDGNGYSTFVVRSTARSRNRESVSGTVVRRTAGSRSGSRDGGGGLEGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHSIAPDASGDGTIVAANLNQEYGDTVPSKPQNSGLQVANEMAAGGTWRKQEQSGAELVAE 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26097022 26109086 + CrPI670011_11g015910.1 Cre11g1591 513336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1591 598 CDD STKc_MAP4K3_like 255 510 - -
Cre11g1591 598 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 204 551 IPR050285 GO:0006468(PANTHER)|GO:0035556(PANTHER)|GO:0043408(PANTHER)
Cre11g1591 598 Gene3D Transferase(Phosphotransferase) domain 1 252 545 - -
Cre11g1591 598 MobiDBLite consensus disorder prediction 24 94 - -
Cre11g1591 598 MobiDBLite consensus disorder prediction 115 200 - -
Cre11g1591 598 MobiDBLite consensus disorder prediction 31 50 - -
Cre11g1591 598 FunFam Aurora kinase A 248 337 - -
Cre11g1591 598 Pfam Protein kinase domain 256 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1591 598 MobiDBLite consensus disorder prediction 213 252 - -
Cre11g1591 598 FunFam serine/threonine-protein kinase dst1 isoform X1 253 543 - -
Cre11g1591 598 ProSiteProfiles Protein kinase domain profile. 256 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1591 598 SMART serkin_6 256 510 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1591 598 MobiDBLite consensus disorder prediction 579 598 - -
Cre11g1591 598 MobiDBLite consensus disorder prediction 157 183 - -
Cre11g1591 598 SUPERFAMILY Protein kinase-like (PK-like) 249 513 IPR011009 -
Cre11g1591 598 ProSitePatterns Protein kinases ATP-binding region signature. 262 285 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1591 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1069 Cre-Chr7:15970094 Cre11g1591 Cre-Chr11:26097022 1.40E-45 dispersed
Cre07g1070 Cre-Chr7:15983830 Cre11g1591 Cre-Chr11:26097022 2.90E-273 dispersed
Cre11g1591 Cre-Chr11:26097022 Cre11g2191 Cre-Chr11:33593124 1.10E-70 dispersed
Cre11g1591 Cre-Chr11:26097022 Cre03g1805 Cre-Chr3:34901700 6.20E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre11g2191 . 104 789 MAP Kinase Kinase Kinase Kinase AT1G53165 64.0 1.5e-225 779.6
Cre11g1591 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.6e-67 253.4
Cre07g1070 . 326 578 MAP Kinase Kinase Kinase Kinase AT1G53165 53.5 2.6e-65 247.3
Cre11g2191 . 104 788 MAP Kinase Kinase Kinase Kinase AT3G15220 65.9 4.0e-231 798.1
Cre11g1591 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.6e-67 254.6
Cre07g1070 . 326 578 MAP Kinase Kinase Kinase Kinase AT3G15220 52.0 1.5e-65 248.1
Cre11g1591 . 4 597 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 2.1e-170 596.7
Cre07g1070 . 60 578 MAP Kinase Kinase Kinase Kinase AT1G69220 60.5 4.3e-152 535.8
Cre07g1069 . 46 364 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 2.3e-81 300.8
Cre01g0552 . 88 755 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 6.2e-253 870.5
Cre05g0552 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.6e-96 350.9
Cre10g0347 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 65.0 2.9e-248 855.1
Cre10g0347 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.9 4.0e-247 851.3
Cre10g1435 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 2.8e-132 469.5
Cre10g0347 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 5.2e-118 422.2
Cre10g1435 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.6 7.7e-216 747.3
Cre01g0552 . 88 415 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.9e-103 372.9
Cre10g1435 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.2e-87 320.1
Cre10g0347 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.6e-75 280.0
Cre05g0552 . 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 60.2 2.6e-144 509.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64557 PF00069 Pkinase 3.70E-68 CL0016 Cre PK