Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g1598 | ATGGAGAACATTCTGGACGAGTATGGGTATTATTGGGAAACGAATATGTTTCTGCAGACGCAAGAGTTCGACAGTTGGGGATTGGATGAAGCATTTTACGGTTCTTACGATTCGAGCTCGCCCGACGGAACGCTGTCGTCGTTAGAGGCGTCCAAAAACATCTTATCGGAGAGGAATCGGAGGAAGAAGCTCAACGATAGGCTTCTTGCTCTCAGAGCTGTGGTCCCTAATATCACCAAAATGGACAAGGCGTCCATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGCAAGAGAAGAGAATCGAATCGGAGATTTCAGATCTGGAATCAGGCAAAATCAAGAACAGAACAACAAGTGAAGCAGACCACGACCATAACGGCAGTGGAATCTCCAGGAAGAGAACGAACAATTGTAATCGGCAAGCACGAGAGAAGCCATCCTCAATCCCGATCGAAATTCTCGATTTGAGCGTGAATTACATGGGAGAGAAGACGATGGTGGTGAGTTTGACGTGCGGAAGAAGAAGCGACGCGGTATTGAAAGTTAGTCAAGTAATTGAATCGCTGAAGCTTAAGATTATTACGGCCAATATCATCGTCGTTGCCAACAGAGTTTTGAATACGCTCTTCCTTGAGGCAGAGAGAGCAGAGGAAGAGGAACTTAAGGTAAAAATAGAAAGAGCCATTGCAGCAATTAGTGATCAACAAAGCCCTATGAGCATTTGA | 735 | 45.58 | MENILDEYGYYWETNMFLQTQEFDSWGLDEAFYGSYDSSSPDGTLSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAQEKRIESEISDLESGKIKNRTTSEADHDHNGSGISRKRTNNCNRQAREKPSSIPIEILDLSVNYMGEKTMVVSLTCGRRSDAVLKVSQVIESLKLKIITANIIVVANRVLNTLFLEAERAEEEELKVKIERAIAAISDQQSPMSI | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 26382814 | 26391163 | - | CrPI670011_11g015980.1 | Cre11g1598 | 513343 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g1598 | 244 | SMART | finulus | 54 | 103 | IPR011598 | GO:0046983(InterPro) | |
Cre11g1598 | 244 | Pfam | Helix-loop-helix DNA-binding domain | 54 | 98 | IPR011598 | GO:0046983(InterPro) | |
Cre11g1598 | 244 | Coils | Coil | 202 | 234 | - | - | |
Cre11g1598 | 244 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 48 | 97 | IPR011598 | GO:0046983(InterPro) | |
Cre11g1598 | 244 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 53 | 113 | IPR036638 | GO:0046983(InterPro) | |
Cre11g1598 | 244 | Gene3D | - | 47 | 114 | IPR036638 | GO:0046983(InterPro) | |
Cre11g1598 | 244 | MobiDBLite | consensus disorder prediction | 116 | 147 | - | - | |
Cre11g1598 | 244 | Coils | Coil | 87 | 114 | - | - | |
Cre11g1598 | 244 | FunFam | Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | 45 | 118 | - | - | |
Cre11g1598 | 244 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 49 | 225 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Cre11g1598 | 244 | MobiDBLite | consensus disorder prediction | 116 | 133 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g1131 | Cre-Chr8:24491564 | Cre11g1598 | Cre-Chr11:26382814 | 2.80E-12 | dispersed | |
Cre10g0420 | Cre-Chr10:3081178 | Cre11g1598 | Cre-Chr11:26382814 | 1.10E-09 | dispersed | |
Cre11g1447 | Cre-Chr11:21715853 | Cre11g1598 | Cre-Chr11:26382814 | 2.40E-11 | dispersed | |
Cre11g1598 | Cre-Chr11:26382814 | Cre11g1904 | Cre-Chr11:30779070 | 2.00E-12 | dispersed | |
Cre02g2467 | Cre-Chr2:37983019 | Cre11g1598 | Cre-Chr11:26382814 | 3.40E-17 | transposed | |
Cre05g2701 | Cre-Chr5:37936977 | Cre11g1598 | Cre-Chr11:26382814 | 5.90E-19 | transposed | |
Cre11g1598 | Cre-Chr11:26382814 | Cre06g2239 | Cre-Chr6:30294908 | 1.40E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54700 | PF00010 | HLH | 7.40E-11 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g1598 | - | - | - | 0.0 |