Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1598 ATGGAGAACATTCTGGACGAGTATGGGTATTATTGGGAAACGAATATGTTTCTGCAGACGCAAGAGTTCGACAGTTGGGGATTGGATGAAGCATTTTACGGTTCTTACGATTCGAGCTCGCCCGACGGAACGCTGTCGTCGTTAGAGGCGTCCAAAAACATCTTATCGGAGAGGAATCGGAGGAAGAAGCTCAACGATAGGCTTCTTGCTCTCAGAGCTGTGGTCCCTAATATCACCAAAATGGACAAGGCGTCCATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGCAAGAGAAGAGAATCGAATCGGAGATTTCAGATCTGGAATCAGGCAAAATCAAGAACAGAACAACAAGTGAAGCAGACCACGACCATAACGGCAGTGGAATCTCCAGGAAGAGAACGAACAATTGTAATCGGCAAGCACGAGAGAAGCCATCCTCAATCCCGATCGAAATTCTCGATTTGAGCGTGAATTACATGGGAGAGAAGACGATGGTGGTGAGTTTGACGTGCGGAAGAAGAAGCGACGCGGTATTGAAAGTTAGTCAAGTAATTGAATCGCTGAAGCTTAAGATTATTACGGCCAATATCATCGTCGTTGCCAACAGAGTTTTGAATACGCTCTTCCTTGAGGCAGAGAGAGCAGAGGAAGAGGAACTTAAGGTAAAAATAGAAAGAGCCATTGCAGCAATTAGTGATCAACAAAGCCCTATGAGCATTTGA 735 45.58 MENILDEYGYYWETNMFLQTQEFDSWGLDEAFYGSYDSSSPDGTLSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAQEKRIESEISDLESGKIKNRTTSEADHDHNGSGISRKRTNNCNRQAREKPSSIPIEILDLSVNYMGEKTMVVSLTCGRRSDAVLKVSQVIESLKLKIITANIIVVANRVLNTLFLEAERAEEEELKVKIERAIAAISDQQSPMSI 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26382814 26391163 - CrPI670011_11g015980.1 Cre11g1598 513343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1598 244 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Cre11g1598 244 Pfam Helix-loop-helix DNA-binding domain 54 98 IPR011598 GO:0046983(InterPro)
Cre11g1598 244 Coils Coil 202 234 - -
Cre11g1598 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
Cre11g1598 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 113 IPR036638 GO:0046983(InterPro)
Cre11g1598 244 Gene3D - 47 114 IPR036638 GO:0046983(InterPro)
Cre11g1598 244 MobiDBLite consensus disorder prediction 116 147 - -
Cre11g1598 244 Coils Coil 87 114 - -
Cre11g1598 244 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 118 - -
Cre11g1598 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 49 225 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre11g1598 244 MobiDBLite consensus disorder prediction 116 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1131 Cre-Chr8:24491564 Cre11g1598 Cre-Chr11:26382814 2.80E-12 dispersed
Cre10g0420 Cre-Chr10:3081178 Cre11g1598 Cre-Chr11:26382814 1.10E-09 dispersed
Cre11g1447 Cre-Chr11:21715853 Cre11g1598 Cre-Chr11:26382814 2.40E-11 dispersed
Cre11g1598 Cre-Chr11:26382814 Cre11g1904 Cre-Chr11:30779070 2.00E-12 dispersed
Cre02g2467 Cre-Chr2:37983019 Cre11g1598 Cre-Chr11:26382814 3.40E-17 transposed
Cre05g2701 Cre-Chr5:37936977 Cre11g1598 Cre-Chr11:26382814 5.90E-19 transposed
Cre11g1598 Cre-Chr11:26382814 Cre06g2239 Cre-Chr6:30294908 1.40E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54700 PF00010 HLH 7.40E-11 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1598 - - - 0.0