Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1622 ATGGGTGAGGATGCAATGGAGAAGATCAATAAGAAATTAATGAGAGAAAACAAATTGCAAAGAAGCCATTTTGATGTGTTGGGAATTTGCTGTTCTTCAGAAGTTCCTTTGATTGAAAACATCCTCAAACCCCTCGAAGGAATCAAACAAATCTCTGTCATTGTCCCTACAAGAACTCTTATTGTCGTTCATGATTCCCTCCTCATTTCCCAACTTCAAATTGTCAAAGCTCTGAATGAAGCAAGATTAGAGGCAAATATACAATTAAATGGAAAGGGAATTAGCAAGAAGAAATGGCCAAGTCCTTTTGCAATAGCCAGTGGATTGCTTCTAACGGCGTCGTTTTTGAAGTATGTGTACCACCCATTGCGGTGGCTTGCCGTCGCCGCCGTTGCCGCCGGCATCTTTCCCATTCTTCTAAAAGCCATTTCCGCCATTCGCCACCTCAGAATTGATGTCAACATTCTTGCTATTATTGCTGTTGTGGGGACAATTGCAATGGATGATTACATGGAAGCTGGAAGTATAGTGTTTTTGTTTTCCATTGCTGAATGGCTTGAGTCAAGAGCAAGCCACAAGGCGAATGCTGCAATGAGTTCATTGATGAGGGTAGCCCCTGAAAAAGCGATTATAGCTGAAAGTGGAGAGGTTGTGGATACAAAAGAGGTGAAATTGAACAGTGTATTGGCTGTGAAGGCTGGGGAAGTTATTCCCATTGATGGTATTGTTGTGGAAGGAAAATGTGAAGTTGATGAGAAAACTTTGACTGGAGAAACATTCCCAGTTCCCAAACACAAACATTCTCTTGTTTGGGCTGGTACCATCAACTTAAATGGTTATATCAGTGTTCAAACTACAGTTGTTGCTGAGGATTGTGTGGTAGCAAAAATGGCTGAGCTTGTAGAAGAAGCTCATAATAACAAATCAAAAACTCAGAGATTCATTGATGAATGTGCCAAATATTACACCCCTGCTGTTGTTATGATATCAGCTTGTCTAGCAGCCATTCCAGCTGCATTGAGAGTTCATAATATCAGCCATTGGCTTCACTTAGCTTTGGTGGTCTTAGTGAGTGCATGTCCCTGTGCCCTAATTCTCTCCACCCCGGTCGCCGCCTTTTGCGCCCTTACGAAGGCTGCCATGGCCGGAGTTTTGATCAAAGGCAGCGACCACCTTGAAGTTCTTTCAAAGATTAAGGTTATGGCCTTTGATAAAACTGGCACAATCACTAGAGGTGAATTTGTTGTAACACATTTTCAAGCTCTAAGAGATGATATTAGCTTCCACACCTTGCTCCAATGGGTTTCAAGCATCGAGAGCAAATCAAGCCATCCAATGGCAGCTGCCCTTGTGAACCATGGAAAGTTGTTTTCTATTGATCTTAAACCCGAAAGCGTTGAGGAATTTGAAAATTTTCCAGGAGAGGGTGTTCGTGGGAAGATGGATGGGAATGATATTTACATTGGAAGTAAGAAAATTGGTGATAGAGCTGGCTACCACACACCAGATTTGAAGTTATTTGATGATGAAACAAAACAAGAGCAAACCCTGGGATATGTATTTTGTGGGGGGACGTTAATTGGATCCTTCGGTCTTTCGGATTCGTGTCGTTCTGGAGTCAAAGAGGCAATCCAGGAGATTAAGAGTTTTGGTATTAAAACTGCTATGCTCACCGGAGATTGTAGTGCAGCTGCCATGCATGCCCAAGAACAGCTCGGGAATGCGTTCGATGTAATCCATTCACAACTTCTACCAAAGGAGAAGGCAAATATCATAAAAGAATTTAAAAAGGATGGAGCAATAATTGCCATGGTTGGAGATGGCTTAAATGATACTCCAGCATTAGCCACTGCTGATATTGGCATATCAATGGGTGTTTCAGGTTCAGCATTGGCCACTCAAACTGGGAATGTGATCTTAATGTCAAATGACATGAGAAAAATTCCAAAAGCCATCAAACTAGCAAAGAAATTCCATACAAAAGTAGTTCAAAATGTCATTTTGTCAATTGGTACCAAGACTGCCATCCTCGGCCTAGCATTCGCCGGACATCCGCTCGTTTGGGCAGCTGTTCTCGCCGATGTCGGTACTTGCCTAATGGTCATCTTGAATAGCATGCTCCTTTTGAGAGGAATTGATCACAAACATGGGAAGAAATGTTGCAAATCTTCCAAGTCATGCTTGGCAAAACATGGACCACGATGCGATGGTCGTAGCACTCGATTGTCTCATCATCACGAGCATCATCATCATCACTACAATCATCGATGCCATATCGTCGATGATCAATCGCCTAGTCGAGAGAATAATCATATCCATAAGCATTGTTGTTTTGAGAAAAAGGATCATAAGATTCAGCTTTCTGATCAAGATCACAATAAAAAAAATTGTGGAATGAATCACGAGAAGAATCATGATCAATATGGTGATCATGAATGTGAAGAAACTAATGTGCCTAGTAAAAAAGAACATAAATTTCATCACAACCACCATTCAAATCAATGTGAGAAAGAGAGTAATGGAACTTCTTCAAAGAAAGTGGCTGAATCAAATTGTAATTGCCACTCACATCATATTGCTATTGAGATTCATGAAGGTAATGAAGGTGAGAGAGAAGAGCATAAATAA 2628 41.25 MGEDAMEKINKKLMRENKLQRSHFDVLGICCSSEVPLIENILKPLEGIKQISVIVPTRTLIVVHDSLLISQLQIVKALNEARLEANIQLNGKGISKKKWPSPFAIASGLLLTASFLKYVYHPLRWLAVAAVAAGIFPILLKAISAIRHLRIDVNILAIIAVVGTIAMDDYMEAGSIVFLFSIAEWLESRASHKANAAMSSLMRVAPEKAIIAESGEVVDTKEVKLNSVLAVKAGEVIPIDGIVVEGKCEVDEKTLTGETFPVPKHKHSLVWAGTINLNGYISVQTTVVAEDCVVAKMAELVEEAHNNKSKTQRFIDECAKYYTPAVVMISACLAAIPAALRVHNISHWLHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGSDHLEVLSKIKVMAFDKTGTITRGEFVVTHFQALRDDISFHTLLQWVSSIESKSSHPMAAALVNHGKLFSIDLKPESVEEFENFPGEGVRGKMDGNDIYIGSKKIGDRAGYHTPDLKLFDDETKQEQTLGYVFCGGTLIGSFGLSDSCRSGVKEAIQEIKSFGIKTAMLTGDCSAAAMHAQEQLGNAFDVIHSQLLPKEKANIIKEFKKDGAIIAMVGDGLNDTPALATADIGISMGVSGSALATQTGNVILMSNDMRKIPKAIKLAKKFHTKVVQNVILSIGTKTAILGLAFAGHPLVWAAVLADVGTCLMVILNSMLLLRGIDHKHGKKCCKSSKSCLAKHGPRCDGRSTRLSHHHEHHHHHYNHRCHIVDDQSPSRENNHIHKHCCFEKKDHKIQLSDQDHNKKNCGMNHEKNHDQYGDHECEETNVPSKKEHKFHHNHHSNQCEKESNGTSSKKVAESNCNCHSHHIAIEIHEGNEGEREEHK 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27042233 27050551 - CrPI670011_11g016220.1 Cre11g1622 513367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1622 875 Gene3D - 413 536 IPR023299 GO:0000166(InterPro)
Cre11g1622 875 Gene3D - 394 656 IPR023214 -
Cre11g1622 875 CDD P-type_ATPase_HM 103 707 - -
Cre11g1622 875 FunFam Copper-transporting ATPase 1, putative 191 305 - -
Cre11g1622 875 SUPERFAMILY Calcium ATPase, transmembrane domain M 154 396 IPR023298 -
Cre11g1622 875 FunFam Putative cadmium/zinc-transporting ATPase 3 413 536 - -
Cre11g1622 875 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 14 838 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Cre11g1622 875 MobiDBLite consensus disorder prediction 790 822 - -
Cre11g1622 875 Pfam haloacid dehalogenase-like hydrolase 398 619 - -
Cre11g1622 875 Pfam E1-E2 ATPase 213 380 - -
Cre11g1622 875 NCBIfam heavy metal translocating P-type ATPase 153 708 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cre11g1622 875 ProSiteProfiles Heavy-metal-associated domain profile. 20 86 IPR006121 GO:0046872(InterPro)
Cre11g1622 875 FunFam Putative cadmium/zinc-transporting ATPase 3 16 89 - -
Cre11g1622 875 ProSitePatterns E1-E2 ATPases phosphorylation site. 404 410 IPR018303 -
Cre11g1622 875 Gene3D - 16 88 - -
Cre11g1622 875 Gene3D - 190 305 - -
Cre11g1622 875 MobiDBLite consensus disorder prediction 790 848 - -
Cre11g1622 875 SFLD p-type atpase 384 657 IPR044492 -
Cre11g1622 875 SUPERFAMILY Calcium ATPase, transduction domain A 216 301 IPR008250 -
Cre11g1622 875 SUPERFAMILY HMA, heavy metal-associated domain 16 85 IPR036163 GO:0046872(InterPro)
Cre11g1622 875 PRINTS P-type cation-transporting ATPase superfamily signature 251 265 - -
Cre11g1622 875 PRINTS P-type cation-transporting ATPase superfamily signature 550 560 - -
Cre11g1622 875 PRINTS P-type cation-transporting ATPase superfamily signature 402 416 - -
Cre11g1622 875 PRINTS P-type cation-transporting ATPase superfamily signature 629 641 - -
Cre11g1622 875 PRINTS P-type cation-transporting ATPase superfamily signature 605 624 - -
Cre11g1622 875 SFLD Haloacid Dehalogenase 384 657 - -
Cre11g1622 875 NCBIfam HAD-IC family P-type ATPase 176 682 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre11g1622 875 NCBIfam cadmium family heavy metal-translocating P-type ATPase 153 492 - -
Cre11g1622 875 PRINTS Copper-transporting ATPase signature 640 654 - -
Cre11g1622 875 PRINTS Copper-transporting ATPase signature 193 211 - -
Cre11g1622 875 PRINTS Copper-transporting ATPase signature 582 599 - -
Cre11g1622 875 SUPERFAMILY HAD-like 401 706 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1545 Cre-Chr2:27832144 Cre11g1622 Cre-Chr11:27042233 1.10E-65 dispersed
Cre10g1092 Cre-Chr10:21557644 Cre11g1622 Cre-Chr11:27042233 1.30E-56 dispersed
Cre11g1622 Cre-Chr11:27042233 Cre06g2228 Cre-Chr6:30154281 1.40E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1622 K01534 - csv:101203668 1410.2