Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1642 ATGATGGGATCTTTAGTGGTGGCGGAATACAATGTGTCCTTTATTGGCTTGAGGACTTTCACCATGGCTGCTGATTCTTCCTTTGATGGTGCTATTTTCGACTCGCCAAAATCTAGTAAGTTGACTATGCAAGAGAAGAGAGAACTTGTATATGAAATTTCAAAGTCACATGGTGCAAGTGAGACACTGCAGTCATGGAGCCGTCAAGACATTCTACAAGTCCTGTGTGCAGAGATGGGGAAAGAAAGAAAATATACAGGCTTGACGAAGCAGAAAATAATAGAGCATCTTTTGAGACTCATATCCGAAAAGAAGTCATCCGTGCCTGAGGTTTTGAAAAACCTTGAGCCACAGTCTCCTGCAGGTGGCCATAAAAATACCAAAAGGCAGAGGAAATCTGAGCATCTAGCTCAACTTTCTGTTCCTGCAAATGACTTTCCAACCAGTAGTTCCCATAATGATTTGGGTCATATGGCTTGCTGCAAAAACTTGGCTTGTCGAGCGACTCTGAGTCCCGAAGATGCTTTTTGTAGAAGGTGTTCATGTTGCATCTGTCGTCAGTATGATGATAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCGGAGCCTCCATTTCAAGGTGACTCATGCAACATGTCATGTCATCTTGAATGTGCTTTAAAAGATGAAAGATCAGGAATTTCGAAAGCCGGACGAAGCAGGGGAATTGATGGGAGCTTCTACTGTGTTTCTTGTGGGAAATTAAATGATTTGCTTGGGTGCTGCAGAAAACAACTAGTTCATGCAAAAGATACAAGAAGGGTCGACATACTGTGTTATCGTGTTTCTTTGAGTCAAAAGCTTCTCCATGGAACTGAGAAGTATAAAGTGCTTTATCAGATTGTTGATGAGTCTGTGAGGAAGCTTGAAGCTGAAGTGGGACCAATAGCCGGTGTACCGGTAAAGATGGGTAGAGGTATTGTAAACAGGCTTTCGTCTGGGCCCGAAGTTCAAAAACTCTGTGCTTCTGCTATTGAGTTACTGGACTCAATGATCTCCAGCAATTCCTTGCACCTTTTGCCTAATCCTGACATTCAAGATGCAAATTTTGTTCCTGCAAACATGGTTAGATTTGAAGATGTTCAGTCAACATCCCTCACTCTAGTTTTGAGTTGTGAAAATGGATCCTCTGAGAACCAGGTGGGCTTCACCTTATGGCATCGTAAGGCAGATGATGCAGATTACCCGGCAGAACCGACATGTATTCTACGACAACCGAAGGCGAGGTGTGCTGTGATGGGACTATCACCTGCTACTAAATATCATTTCAAAATTGTTCAGTTTGAGGGGACAAGGGAGTTGAGGGAGTTTGAAGTGCAGTTCTCAACAATTAGGGAGGTAGAAGAAAACCCAGGCTGTTTAGAAATTGAAAGAAGCCAAAGCCACGCAACCAACTGTAGCGACCTTTCTAATCCTTCTTCGGTTGAAGACGAAACTACCGACATTCTTCCCTATGGTGATCGAACCGATAACCTAGGAAAAAACTCCACTGCCTATTCAAAGGGCACCGAAATGCTTTCCTCGGCTATCTTATCGACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACACCTGGGGGAACAGTTTCTGTGTTGGATGAGGCAAATGCTGCAGGAATGGTAGGTTTGATCCCCAGTTCTGTTGCATCAAAGCTCGAGAACAGGCATGGACCAACTGCCCCAAAACTCAACACCGATAATCAGTTAAACGCCCTTGTTCGATCTGGTATGGAGCGCCAGCCATTCGTTGGCTGTTCTTCAGATGGCTTGCCTATTACTCCCTGCAAGCTTGAAGTGCTAAAGGATAGTCTTGGTAGAGGTGAGAGACCGAAATCCGGCTGCAAGGATCTCGACAATAGGACTCGAAAAGGAGGGGAACCCCAAGACGGCAGCACGTCAAAGATGCGAACTGGGGAAAGACAGGACGACAAATGTGCTGAAAATGGTGTTTCAGATAGGGATTTCGAGCATTATGTGAAGGTCATTAGATGGTTAGAATGCGAGGGTCATATTGAAAAAAATTTCAGGCAGAAATTTCTTACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTGAAGATTGTGAAGGTGTTTGTTGATACCTTTATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTAGATACTTTTTCTGAATGCATTTCGAGCAAAAAACCGACGACTATGCCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2268 44.22 MMGSLVVAEYNVSFIGLRTFTMAADSSFDGAIFDSPKSSKLTMQEKRELVYEISKSHGASETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLISEKKSSVPEVLKNLEPQSPAGGHKNTKRQRKSEHLAQLSVPANDFPTSSSHNDLGHMACCKNLACRATLSPEDAFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDERSGISKAGRSRGIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDILCYRVSLSQKLLHGTEKYKVLYQIVDESVRKLEAEVGPIAGVPVKMGRGIVNRLSSGPEVQKLCASAIELLDSMISSNSLHLLPNPDIQDANFVPANMVRFEDVQSTSLTLVLSCENGSSENQVGFTLWHRKADDADYPAEPTCILRQPKARCAVMGLSPATKYHFKIVQFEGTRELREFEVQFSTIREVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDRTDNLGKNSTAYSKGTEMLSSAILSTDAFNLSDNGEEGTPGGTVSVLDEANAAGMVGLIPSSVASKLENRHGPTAPKLNTDNQLNALVRSGMERQPFVGCSSDGLPITPCKLEVLKDSLGRGERPKSGCKDLDNRTRKGGEPQDGSTSKMRTGERQDDKCAENGVSDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSECISSKKPTTMPPGFCMKLWH 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27429622 27433867 - CrPI670011_11g016420.1 Cre11g1642 513387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1642 755 MobiDBLite consensus disorder prediction 113 143 - -
Cre11g1642 755 PANTHER VIN3-LIKE PROTEIN 2-RELATED 34 755 IPR044514 GO:0010048(InterPro)|GO:0040029(InterPro)
Cre11g1642 755 MobiDBLite consensus disorder prediction 622 663 - -
Cre11g1642 755 Pfam PHD - plant homeodomain finger protein 161 281 IPR032881 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1878 Cre-Chr6:25291506 Cre11g1642 Cre-Chr11:27429622 4.50E-94 dispersed
Cre11g0746 Cre-Chr11:4615645 Cre11g1642 Cre-Chr11:27429622 1.00E-94 dispersed
Cre08g1101 Cre-Chr8:24185296 Cre11g1642 Cre-Chr11:27429622 8.80E-113 transposed
Cre11g1642 Cre-Chr11:27429622 Cre06g2216 Cre-Chr6:29982537 3.50E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1642 - - - 0.0