Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1688 ATGGAACATGAACTAATGAACGGCCAAGATTTCATCTTCCGATCAAAGCTCCCAGACATATACATCCCAAACCACCTCCCTCTCCACACCTATTGCTTTGAACACCTCTCCCAATTCCAGCACCGCCCTTGCCTCATCAACGGCGCCACCGGCGAGGTCCACACCTACGCCGCGGTCGACCTAGCAGCCAGACGTGTCGCTGCCGGGCTGAGCAAGATCGGCGTTGGACAAGGTGACGTCATAATGCTCATGCTCCAAAACAGCCCCGAGTTCGTGTTTGCGTTCCTCGGCGCGTCGTTCGCCGGTGCAATTAGCACCACGGCGAACCCGCTGTACAAGCCAGGGGAGATTGCGAGGCAGGCGGCAACGGCGAGGGCGAAGGTAATAATTACGCAGGCGGAGTTTGTGGAGAAGGTTAGGGGATTTGCTGTGGAAAATGGGGTGAAGATATTGTGTACGGATTCCCCGCCGGCGGGTTGTTTGAGATTCTCGGAGGTTATGGAGGCGGATGAAAATGAGATTCCGGCGGTGAAGATTAATTCAAATGATGTTGTTGCTCTTCCTTTTTCGTCTGGAACTACTGGAATTCCTAAAGGGGTTATGTTAACGCATAAATCTCTTGTCACAAGCGTTGCTCAACAGGTGGATGGAGAGAATCCAAATGTAAACTTGAATAGCAACGATGTGATCATATGTGTTCTTCCATTATTCCATATCTATTCTCTCAACTCCGTTCTCCTCTGTGGACTACGTGTCGGCGCCGCCATTCTCATCCTCCAAAAATACGACATGTCGTCCCTTCTTCACCTCATTCAAACCCATAAGGCCACAATTGCTCCATTCGTTCCTCCCATCGTCTTGGACTTCGCCAAAAACCCCGACATCCACCATTACGACTTGTCGTCCATCAGAATCATCATGTCGGGCGCGGCGCCTATGGGGAAGGACCTTGAGGATACTGTCAAAGCTAGGCTCCCCAATGCCACGCTCGGACAGGGGTATGGAATGACTGAGGCAGGGCCAGTGCTATCTATGTGTTTGGCGTTTGCAAAGGAACCTTTCAAGGTAAAATCAGGTGCGTGCGGGACCGTCGTAAGGAATGCTGAGATGAAGATCATACACCCTGACACTTCCGTATCTTTGCCACGTAATCACCCTGGTGAGATCTGCATACGTGGCTCCCAGATCATGAAAGGTTATCTCAACAACAAAGAAGCAACAGAGAAGACTATAGACAAAGACAGATGGCTCCACACAGGAGACTTAGGGTTCATCGACGATAACGACGAGATCTTCATCATTGACCGATTGAAGGAACTGATCAAATACAAGGGATATCAAGTTGCCCCAGCAGAGCTTGAAGCTCTCTTGACTTCAAACCCTAACATTTCTGCAGCTGCTGTCATACCTATGGAAGATGAAGCAGCAGGAGAGATCCCTGTTGCATTTGTTGTTAGATCTAATGGTTCCAAGATTAGTGAAAATGATATCAAAAAGTATATTTCGGATCAGGTTATATATTACAAAAAAATCAGAAAGGTTTTCTTTGTGGACTCAATTCCAATTGCCCCTTCAGGCAAGATATTGAGGAAGGTTTTAAAAGCTCAGTTAGAGGCTGGTGCCTTTTAA 1629 48.37 MEHELMNGQDFIFRSKLPDIYIPNHLPLHTYCFEHLSQFQHRPCLINGATGEVHTYAAVDLAARRVAAGLSKIGVGQGDVIMLMLQNSPEFVFAFLGASFAGAISTTANPLYKPGEIARQAATARAKVIITQAEFVEKVRGFAVENGVKILCTDSPPAGCLRFSEVMEADENEIPAVKINSNDVVALPFSSGTTGIPKGVMLTHKSLVTSVAQQVDGENPNVNLNSNDVIICVLPLFHIYSLNSVLLCGLRVGAAILILQKYDMSSLLHLIQTHKATIAPFVPPIVLDFAKNPDIHHYDLSSIRIIMSGAAPMGKDLEDTVKARLPNATLGQGYGMTEAGPVLSMCLAFAKEPFKVKSGACGTVVRNAEMKIIHPDTSVSLPRNHPGEICIRGSQIMKGYLNNKEATEKTIDKDRWLHTGDLGFIDDNDEIFIIDRLKELIKYKGYQVAPAELEALLTSNPNISAAAVIPMEDEAAGEIPVAFVVRSNGSKISENDIKKYISDQVIYYKKIRKVFFVDSIPIAPSGKILRKVLKAQLEAGAF 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28275371 28282449 - CrPI670011_11g016880.1 Cre11g1688 513433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1688 542 Gene3D - 438 540 IPR045851 -
Cre11g1688 542 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Cre11g1688 542 CDD 4CL 22 533 - -
Cre11g1688 542 Pfam AMP-binding enzyme 34 401 IPR000873 -
Cre11g1688 542 SUPERFAMILY Acetyl-CoA synthetase-like 12 539 - -
Cre11g1688 542 Gene3D - 4 437 IPR042099 -
Cre11g1688 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 438 - -
Cre11g1688 542 FunFam 4-coumarate--CoA ligase 2 439 540 - -
Cre11g1688 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 534 - GO:0016405(PANTHER)
Cre11g1688 542 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0836 Cre-Chr10:9093723 Cre11g1688 Cre-Chr11:28275371 1.30E-23 dispersed
Cre10g1429 Cre-Chr10:27987157 Cre11g1688 Cre-Chr11:28275371 1.70E-208 dispersed
Cre10g2123 Cre-Chr10:35815935 Cre11g1688 Cre-Chr11:28275371 3.10E-96 dispersed
Cre11g1688 Cre-Chr11:28275371 Cre11g1786 Cre-Chr11:29452450 2.60E-108 dispersed
Cre11g1688 Cre-Chr11:28275371 Cre06g2199 Cre-Chr6:29800320 8.00E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1688 K01904 - csv:101210868 963.755