Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1741 ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCTCGAATCAAAAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTCCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGTGCAAAGACAATGAACTCGTTACACTTAAAGCACTGTGTACAAAGCTACAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGCAATGATTTTGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCATGGAAGCACTGGTAGAGGAAGAGGAAGGGGACGAGGAAGGGGTCGTGGACGACCTGCTCGAACAGCCGAAAGGGACAACTTCCAACCTAACCCTGACGTCGACCCTTGCACGTCAATAGAGAACAGGAACAAAAACCCCAACCCAGATGTGCACATGGAGCATCACGTCGAGCCTAGCGAAACACCAAAAGAAGTAGGTGAAGCCAATCAAGCTATCCAAAACTTCGATCTTAATGCGGATGTCATCGCCAGCGAAGACTCCAAGAGTGTACCACCACCACCAGCAGTGTCAGATGCGCCTGTCGAACCGGCTGCGCCTACTACCACCGAGTCCGAGACTAAAACAGCTGACGAATTCCCTGCCTGGCCTCTTTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCTCACGAGTAGATGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA 852 47.65 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGRGRGRGRGRPARTAERDNFQPNPDVDPCTSIENRNKNPNPDVHMEHHVEPSETPKEVGEANQAIQNFDLNADVIASEDSKSVPPPPAVSDAPVEPAAPTTTESETKTADEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEEE 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29022614 29027441 + CrPI670011_11g017410.1 Cre11g1741 513486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1741 283 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Cre11g1741 283 MobiDBLite consensus disorder prediction 174 190 - -
Cre11g1741 283 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cre11g1741 283 MobiDBLite consensus disorder prediction 90 250 - -
Cre11g1741 283 FunFam dr1-associated corepressor homolog 1 86 - -
Cre11g1741 283 MobiDBLite consensus disorder prediction 90 132 - -
Cre11g1741 283 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 179 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Cre11g1741 283 MobiDBLite consensus disorder prediction 159 173 - -
Cre11g1741 283 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2564 Cre-Chr2:38906671 Cre11g1741 Cre-Chr11:29022614 2.30E-42 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54710 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1741 K21752 - csv:101209714 472.626