Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1741 ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCTCGAATCAAAAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCAGTCCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTCTGTGATCGTACATATGAGATAACTCTACAAAGAGGTGCAAAGACAATGAACTCGTTACACTTAAAGCACTGTGTACAAAGCTACAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGGTGATGAGGGCAATGATTTTGATGAGTTGAAGAAGAGCAAGATGCATGACATGAGCCATGGAAGCACTGGTAGAGGAAGAGGAAGGGGACGAGGAAGGGGTCGTGGACGACCTGCTCGAACAGCCGAAAGGGACAACTTCCAACCTAACCCTGACGTCGACCCTTGCACGTCAATAGAGAACAGGAACAAAAACCCCAACCCAGATGTGCACATGGAGCATCACGTCGAGCCTAGCGAAACACCAAAAGAAGTAGGTGAAGCCAATCAAGCTATCCAAAACTTCGATCTTAATGCGGATGTCATCGCCAGCGAAGACTCCAAGAGTGTACCACCACCACCAGCAGTGTCAGATGCGCCTGTCGAACCGGCTGCGCCTACTACCACCGAGTCCGAGACTAAAACAGCTGACGAATTCCCTGCCTGGCCTCTTTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCTCACGAGTAGATGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA 852 47.65 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLGDEGNDFDELKKSKMHDMSHGSTGRGRGRGRGRGRGRPARTAERDNFQPNPDVDPCTSIENRNKNPNPDVHMEHHVEPSETPKEVGEANQAIQNFDLNADVIASEDSKSVPPPPAVSDAPVEPAAPTTTESETKTADEFPAWPLSDVDKMAIDPLQYAHLSSRVDEEEEDYDEEE 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29022614 29027441 + CrPI670011_11g017410.1 Cre11g1741 513486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1741 283 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Cre11g1741 283 MobiDBLite consensus disorder prediction 174 190 - -
Cre11g1741 283 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cre11g1741 283 MobiDBLite consensus disorder prediction 90 250 - -
Cre11g1741 283 FunFam dr1-associated corepressor homolog 1 86 - -
Cre11g1741 283 MobiDBLite consensus disorder prediction 90 132 - -
Cre11g1741 283 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 179 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Cre11g1741 283 MobiDBLite consensus disorder prediction 159 173 - -
Cre11g1741 283 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1741 K21752 - - csv:101209714 472.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2564 Cre-Chr2:38906671 Cre11g1741 Cre-Chr11:29022614 2.30E-42 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g2647 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 9.8e-89 323.6
Cre09g1461 . 102 245 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.3e-53 206.1
Cre09g1461 . 102 200 CCAAT-HAP5 Transcription Factor Family AT1G08970 87.9 4.5e-46 181.8
Cre06g2647 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 8.0e-43 171.0
Cre09g1461 . 102 244 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 1.2e-51 200.3
Cre06g2647 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.0e-51 199.5
Cre06g2647 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 4.0e-38 155.2
Cre06g2647 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 8.0e-81 297.4
Cre09g1461 . 102 253 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.1e-49 193.0
Cre09g1461 . 66 233 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.9e-65 245.4
Cre06g2647 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.5e-50 194.9
Cre11g1741 . 1 282 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.3 5.4e-60 228.4
Cre08g0946 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.7 2.2e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54710 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Cre TF