Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre11g1745 | ATGGGAAAGCTTAGCTTGAACTGCTGTAATAGCTTCCTTGAGAATTCAAAACCTTATTTTGCCATGATATCCTTACAATTTGGATATGCTGGCATGAACATCATCTCTAAAGTCTCTCTTAGTAGAGGGATGAGTCATTACGTCCTCGTCGTTTATCGACATGCTTTCGCTACTGCTTCCATTGCTCCCTTCGTTCTCTTCTTCGAACGGAGAGGACAGCCAAGGATAACACTCAAAGTTTTCATTCAAATATTTGTGTTGGCTTTGCTTGGCCCGGTTATCGATCAAAATTTCTACTATGCTGGGCTAAAATATACTTCACCAACTTTCTCTTGTGCCATGAGCAACATGCTGCCTGCAATGACATTTGTGATGGCTGTGATCTTTAGGATGGAAAAATTGGAGATGAAGAAATTGAGATGCCAAGCAAAAGTTTTGGGAACTTTAGTGTCAGTGGCTGGAGCAATGGTGATGACTTTATACAAAGGTCCACTTCTTCAAATGGCTTGGTCTAAAAATTCCCATATCACCAATTCTAATGAAACTTCCAACAACAAAGATTGGTTCAAAGGCTCCATTTTCCTCATCATTGCCACTCTTGCTTGGGCTTCTCTCTTTGTTTTGCAGAATGAGGCATTGAAGACATACAAGAACCATCAACTCACTCTCACCACACTCGTGTGTTTTCTTGGGACTTTGCAAGCCATAGCTGTGACTTTAGTAGCCGAGCACAAAGCTTCGGTTTGGACAATTGGTTGGGACATGAATCTTCTTGCTGCTGCCTATGCTGGAATTGTGACATCAAGTATTTCATACTATGTACAAGGGTTGGTGATGAAAAAGAGAGGACCTGTATTTACAACTGCATTTAGTCCTTTGATTATGATACTTGTGGCCATCATGGGCTCTCTCATCCTTGCTGAAAAGATTTTTCTTGGAGGAATAATAGGATCCATCTTGATAGTGTTTGGGCTATATTCAGTACTTTGGGGAAAGCACAAAGAGAATTTGGAGATGATTAAAACTGCTGCTGTTGATGATGAAATACCAAAAGCAATTAAAGCTTCTTCTCAACCAAATATTAATAATAATAATAATAATAATAATAATAATATTGCAAATAATGTTGAAGCTAATGAGATTGTGACCATGGCACCCAATAAGCTAAGTTCCAATAATAATTCAATTTTCATTTCCATGCCTGCCCTTGAAAACCCCATTAAACCCAACCAAATCCCAAGAGAATAA | 1248 | 38.86 | MGKLSLNCCNSFLENSKPYFAMISLQFGYAGMNIISKVSLSRGMSHYVLVVYRHAFATASIAPFVLFFERRGQPRITLKVFIQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVIFRMEKLEMKKLRCQAKVLGTLVSVAGAMVMTLYKGPLLQMAWSKNSHITNSNETSNNKDWFKGSIFLIIATLAWASLFVLQNEALKTYKNHQLTLTTLVCFLGTLQAIAVTLVAEHKASVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKRGPVFTTAFSPLIMILVAIMGSLILAEKIFLGGIIGSILIVFGLYSVLWGKHKENLEMIKTAAVDDEIPKAIKASSQPNINNNNNNNNNNIANNVEANEIVTMAPNKLSSNNNSIFISMPALENPIKPNQIPRE | 415 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 29068755 | 29072788 | - | CrPI670011_11g017450.1 | Cre11g1745 | 513490 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre11g1745 | 415 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 52 | 162 | - | - | |
| Cre11g1745 | 415 | Pfam | EamA-like transporter family | 19 | 159 | IPR000620 | GO:0016020(InterPro) | |
| Cre11g1745 | 415 | Pfam | EamA-like transporter family | 190 | 329 | IPR000620 | GO:0016020(InterPro) | |
| Cre11g1745 | 415 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 249 | 334 | - | - | |
| Cre11g1745 | 415 | PANTHER | WAT1-RELATED PROTEIN | 20 | 352 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre06g1446 | Cre-Chr6:8823185 | Cre11g1745 | Cre-Chr11:29068755 | 7.70E-69 | dispersed | |
| Cre06g2320 | Cre-Chr6:31148932 | Cre11g1745 | Cre-Chr11:29068755 | 1.10E-60 | dispersed | |
| Cre08g0648 | Cre-Chr8:19422400 | Cre11g1745 | Cre-Chr11:29068755 | 1.90E-59 | dispersed | |
| Cre09g2376 | Cre-Chr9:43102513 | Cre11g1745 | Cre-Chr11:29068755 | 1.70E-60 | dispersed | |
| Cre10g1584 | Cre-Chr10:29891533 | Cre11g1745 | Cre-Chr11:29068755 | 3.50E-37 | dispersed | |
| Cre10g1586 | Cre-Chr10:29908025 | Cre11g1745 | Cre-Chr11:29068755 | 4.30E-43 | dispersed | |
| Cre10g1761 | Cre-Chr10:32009258 | Cre11g1745 | Cre-Chr11:29068755 | 3.50E-16 | dispersed | |
| Cre10g1762 | Cre-Chr10:32014096 | Cre11g1745 | Cre-Chr11:29068755 | 2.20E-125 | dispersed | |
| Cre11g1745 | Cre-Chr11:29068755 | Cre11g1981 | Cre-Chr11:31568705 | 1.40E-93 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre11g1745 | - | - | - | 0.0 |