Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1770 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAGCAGCAGCAACATCATCAACTCCACCATCAAAACCAAAACCAAAAACGTGGTTCTTCTCAATCACAATCTCAATCTCCATCACCATCTCCATCTCCATCTCCTCAGCAGCACCTTCATGGAGTTCCTTTCGATGGCAGATCACCAGTTTCAGCGGCGGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCCTCTCTTGTCTCCCTCCCTCCTCCTTCTTCTTCCAATTCTTCTGTTTCCTCCGCCTCTAACGCCGCCGCCCCTCCTCCCCACCTCGACGCTTCACTCGTCATCGCCACCCGATCCGACACCACCACCACCACCGATCCTTCTCCCCGATCTGCTTCCAACAATAACGCTCTCAAGCGTTCCACCAAAGATCGCCACACTAAAGTCGACGGTCGCGGCCGTCGTATACGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAGTTGACTCGTGAATTAGGCCATAAGTCAGACGGCGAAACCATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCCATCATCGCCGCTACTGGCACCGGTACAATCCCTGCTAATTTCTCCTCCTTAAATATCTCAATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCCAAATCCGCTCCCCATTCCTTTCATGGTGCTCTGGCTCTCGCTCACCATCCCCACGCCTATGATGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCAGCACCAGCAACAGCAACAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACACTCTCCCGACCGGCGGCGGCGGAGGAGATTCAACCGATAACTATATGAGAAAACGATTTAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGAGAGAGCAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCTTCTTCGTCGGGGCTACTGAGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGACAGGTTCAGGCGGAGGAAATGTAGGGAGTTCTTCTGGCGGCGGCGGCGGCGTTGGGGGAATGGAAGCTCATCAGATGTGGCCATTTTCGACAAGTGGAAACACATTACAGGCGCCGTTGCATTTGATGCCAAGATTCAACATCCCGGAAATTCAAGCGGCGGCGGCAGCAGCAGGAGGACGAGGCGGCGGGCAATTGCAACTGGGTTCGATGTTGATGCAACAAGGTGGCGGAGGAGGCGGTGGTTTGGGAGTAACGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTACTCTAGAGGCGGTGGTTTCAATATTAATTCTGATCATAATCATCCATTGGAGAATCATCCTCACACTCATACTACTGATAGTGGAGATGAAGCTCCAAACACTTCACAATGA 1554 53.22 MELTDMQQSNKQQQQQQQHHQLHHQNQNQKRGSSQSQSQSPSPSPSPSPQQHLHGVPFDGRSPVSAAAAAAGGGGGGGGGAPPFMASISSLVSLPPPSSSNSSVSSASNAAAPPPHLDASLVIATRSDTTTTTDPSPRSASNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYDEGFAHAALLGFHQHQQQQQQQHQLNLMTADQIGDTLPTGGGGGDSTDNYMRKRFREDLFKEDTQSPGESSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSSGGGGGVGGMEAHQMWPFSTSGNTLQAPLHLMPRFNIPEIQAAAAAAGGRGGGQLQLGSMLMQQGGGGGGGLGVTESNLGMLAALNAAYSRGGGFNINSDHNHPLENHPHTHTTDSGDEAPNTSQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29315693 29317246 - CrPI670011_11g017700.1 Cre11g1770 513515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1770 517 ProSiteProfiles TCP domain profile. 150 204 IPR017887 -
Cre11g1770 517 MobiDBLite consensus disorder prediction 489 517 - -
Cre11g1770 517 Pfam TCP family transcription factor 149 277 IPR017887 -
Cre11g1770 517 MobiDBLite consensus disorder prediction 312 352 - -
Cre11g1770 517 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 102 482 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cre11g1770 517 MobiDBLite consensus disorder prediction 127 162 - -
Cre11g1770 517 MobiDBLite consensus disorder prediction 127 146 - -
Cre11g1770 517 MobiDBLite consensus disorder prediction 1 41 - -
Cre11g1770 517 MobiDBLite consensus disorder prediction 93 110 - -
Cre11g1770 517 MobiDBLite consensus disorder prediction 147 162 - -
Cre11g1770 517 MobiDBLite consensus disorder prediction 1 78 - -
Cre11g1770 517 MobiDBLite consensus disorder prediction 93 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1570 Cre-Chr1:28832522 Cre11g1770 Cre-Chr11:29315693 4.90E-34 dispersed
Cre06g2493 Cre-Chr6:32663957 Cre11g1770 Cre-Chr11:29315693 2.30E-37 dispersed
Cre09g1714 Cre-Chr9:35311297 Cre11g1770 Cre-Chr11:29315693 3.70E-28 dispersed
Cre11g1770 Cre-Chr11:29315693 Cre05g2607 Cre-Chr5:37152907 1.00E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54711 PF03634 TCP 6.50E-39 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1770 - - - 0.0