Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1770 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAGCAGCAGCAACATCATCAACTCCACCATCAAAACCAAAACCAAAAACGTGGTTCTTCTCAATCACAATCTCAATCTCCATCACCATCTCCATCTCCATCTCCTCAGCAGCACCTTCATGGAGTTCCTTTCGATGGCAGATCACCAGTTTCAGCGGCGGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCCTCTCTTGTCTCCCTCCCTCCTCCTTCTTCTTCCAATTCTTCTGTTTCCTCCGCCTCTAACGCCGCCGCCCCTCCTCCCCACCTCGACGCTTCACTCGTCATCGCCACCCGATCCGACACCACCACCACCACCGATCCTTCTCCCCGATCTGCTTCCAACAATAACGCTCTCAAGCGTTCCACCAAAGATCGCCACACTAAAGTCGACGGTCGCGGCCGTCGTATACGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAGTTGACTCGTGAATTAGGCCATAAGTCAGACGGCGAAACCATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCCATCATCGCCGCTACTGGCACCGGTACAATCCCTGCTAATTTCTCCTCCTTAAATATCTCAATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCCAAATCCGCTCCCCATTCCTTTCATGGTGCTCTGGCTCTCGCTCACCATCCCCACGCCTATGATGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCAGCACCAGCAACAGCAACAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACACTCTCCCGACCGGCGGCGGCGGAGGAGATTCAACCGATAACTATATGAGAAAACGATTTAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGAGAGAGCAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCTTCTTCGTCGGGGCTACTGAGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGACAGGTTCAGGCGGAGGAAATGTAGGGAGTTCTTCTGGCGGCGGCGGCGGCGTTGGGGGAATGGAAGCTCATCAGATGTGGCCATTTTCGACAAGTGGAAACACATTACAGGCGCCGTTGCATTTGATGCCAAGATTCAACATCCCGGAAATTCAAGCGGCGGCGGCAGCAGCAGGAGGACGAGGCGGCGGGCAATTGCAACTGGGTTCGATGTTGATGCAACAAGGTGGCGGAGGAGGCGGTGGTTTGGGAGTAACGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTACTCTAGAGGCGGTGGTTTCAATATTAATTCTGATCATAATCATCCATTGGAGAATCATCCTCACACTCATACTACTGATAGTGGAGATGAAGCTCCAAACACTTCACAATGA 1554 53.22 MELTDMQQSNKQQQQQQQHHQLHHQNQNQKRGSSQSQSQSPSPSPSPSPQQHLHGVPFDGRSPVSAAAAAAGGGGGGGGGAPPFMASISSLVSLPPPSSSNSSVSSASNAAAPPPHLDASLVIATRSDTTTTTDPSPRSASNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYDEGFAHAALLGFHQHQQQQQQQHQLNLMTADQIGDTLPTGGGGGDSTDNYMRKRFREDLFKEDTQSPGESSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSSGGGGGVGGMEAHQMWPFSTSGNTLQAPLHLMPRFNIPEIQAAAAAAGGRGGGQLQLGSMLMQQGGGGGGGLGVTESNLGMLAALNAAYSRGGGFNINSDHNHPLENHPHTHTTDSGDEAPNTSQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29315693 29317246 - CrPI670011_11g017700.1 Cre11g1770 513515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1770 517 ProSiteProfiles TCP domain profile. 150 204 IPR017887 -
Cre11g1770 517 MobiDBLite consensus disorder prediction 489 517 - -
Cre11g1770 517 Pfam TCP family transcription factor 149 277 IPR017887 -
Cre11g1770 517 MobiDBLite consensus disorder prediction 312 352 - -
Cre11g1770 517 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 102 482 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cre11g1770 517 MobiDBLite consensus disorder prediction 127 162 - -
Cre11g1770 517 MobiDBLite consensus disorder prediction 127 146 - -
Cre11g1770 517 MobiDBLite consensus disorder prediction 1 41 - -
Cre11g1770 517 MobiDBLite consensus disorder prediction 93 110 - -
Cre11g1770 517 MobiDBLite consensus disorder prediction 147 162 - -
Cre11g1770 517 MobiDBLite consensus disorder prediction 1 78 - -
Cre11g1770 517 MobiDBLite consensus disorder prediction 93 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1770 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1570 Cre-Chr1:28832522 Cre11g1770 Cre-Chr11:29315693 4.90E-34 dispersed
Cre06g2493 Cre-Chr6:32663957 Cre11g1770 Cre-Chr11:29315693 2.30E-37 dispersed
Cre09g1714 Cre-Chr9:35311297 Cre11g1770 Cre-Chr11:29315693 3.70E-28 dispersed
Cre11g1770 Cre-Chr11:29315693 Cre05g2607 Cre-Chr5:37152907 1.00E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g1714 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.6e-68 255.0
Cre02g1732 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 2.1e-60 229.6
Cre06g0793 . 59 341 TCP Transcription Factor Family AT2G45680 54.5 4.2e-67 252.3
Cre05g2607 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 9.3e-41 165.2
Cre01g1570 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.8e-39 161.0
Cre11g1770 . 149 231 TCP Transcription Factor Family AT3G47620 90.4 1.4e-36 151.4
Cre11g1770 . 149 241 TCP Transcription Factor Family AT1G69690 82.8 1.6e-36 150.6
Cre05g1545 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.4e-60 229.2
Cre02g1732 . 9 255 TCP Transcription Factor Family AT5G08330 56.3 1.5e-63 240.0
Cre09g1714 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 9.4e-63 237.3
Cre07g1995 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.4e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54711 PF03634 TCP 6.50E-39 No_clan Cre TF