Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1772 ATGGAGACTCACTATAATCACAATCTATTCGACAGGCGACCCATTGTGAAGAACAAGTCTCCTCCTGTCAAGTGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCGACTGGAGGAAAGTGCTTTCTTTTGAAATGGGTTCCAGAGGATACATTAAAGGCATTAAAGGAGAAGGCAAAACAGTCAGAGGCACCAGAACCTGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTATGAAGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCATATTCATGGGGAGAGGCAATATGTTTGTCACTATGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCAAAGTTGAAAAGACACTTCCTTATTCATACTGGTGAAAGAGATTTTGTTTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCCCATATGAAAACGCATTCACAAGAGAACTACCATATTTGTCCGTACGCTGATTGTGGAAAGAGATTTGCCCACGAGTACAAATTGAAGAATCACATTACATCTCACCATGAAAAGAATGTGACAGCTGAAGTGGTCAAATATACACCGCCTTCTGAGAAGCAAACTAAGGTTTCTAAACCTACTGGAGGAGCTTATGCTTCTGCGTCATCAGATCGTCCATATGCTTGCCCCTATGAAGGGTGTGAAAAGGCTTACATCCATGAATACAAGCTTAAACTCCATTTGAGAAGAGAGCATCCTGGACATCTTGTAGAAGACAATGGCAATGCTCCACATAATGGGGAAAATGAGGTAGAAGCCAGTGATCAAGATGGCTATGGCGGAAAACGCGCAAATGTCAAAAACCAGAAACAGAACAAACCTAAACCGAACTTGAAGTTACCGCCTTCAAAAATGTCACAGCGAAAAGGCACGACGACTCCATCTCCTGCCCCAATGAGTGCAGTTAAAAAATCATGGCCAGTTAAAGAAGAAAACTACGAGGAAGAAGATAGCGAAGAAACGGAGGAGGAGGACCGTGAGAATGTGGAGGAGGGTTGGAGATATGCTGAAAACGAAGATGATGATGAGGAAACAGAATATGAAGATTAA 1116 42.65 METHYNHNLFDRRPIVKNKSPPVKWIKEWVPQDVVATGGKCFLLKWVPEDTLKALKEKAKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYADCGKRFAHEYKLKNHITSHHEKNVTAEVVKYTPPSEKQTKVSKPTGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAPHNGENEVEASDQDGYGGKRANVKNQKQNKPKPNLKLPPSKMSQRKGTTTPSPAPMSAVKKSWPVKEENYEEEDSEETEEEDRENVEEGWRYAENEDDDEETEYED 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29339816 29343980 + CrPI670011_11g017720.1 Cre11g1772 513517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1772 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Cre11g1772 371 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Cre11g1772 371 Gene3D Classic Zinc Finger 201 271 - -
Cre11g1772 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Cre11g1772 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Cre11g1772 371 FunFam Putative zinc finger protein 143 103 133 - -
Cre11g1772 371 MobiDBLite consensus disorder prediction 306 321 - -
Cre11g1772 371 FunFam zinc finger transcription factor YY1 163 194 - -
Cre11g1772 371 Gene3D Classic Zinc Finger 162 191 - -
Cre11g1772 371 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Cre11g1772 371 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Cre11g1772 371 MobiDBLite consensus disorder prediction 356 371 - -
Cre11g1772 371 Gene3D Classic Zinc Finger 77 102 - -
Cre11g1772 371 Gene3D Classic Zinc Finger 134 161 - -
Cre11g1772 371 MobiDBLite consensus disorder prediction 256 371 - -
Cre11g1772 371 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Cre11g1772 371 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Cre11g1772 371 FunFam Zinc finger transcription factor YY1 204 271 - -
Cre11g1772 371 FunFam Zinc finger protein 410 134 161 - -
Cre11g1772 371 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
Cre11g1772 371 SMART c2h2final6 136 160 IPR013087 -
Cre11g1772 371 SMART c2h2final6 166 190 IPR013087 -
Cre11g1772 371 SMART c2h2final6 77 101 IPR013087 -
Cre11g1772 371 SMART c2h2final6 229 254 IPR013087 -
Cre11g1772 371 SMART c2h2final6 106 130 IPR013087 -
Cre11g1772 371 MobiDBLite consensus disorder prediction 334 349 - -
Cre11g1772 371 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Cre11g1772 371 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Cre11g1772 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Cre11g1772 371 FunFam zinc finger transcription factor YY1 77 102 - -
Cre11g1772 371 MobiDBLite consensus disorder prediction 203 227 - -
Cre11g1772 371 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Cre11g1772 371 Gene3D Classic Zinc Finger 103 133 - -
Cre11g1772 371 MobiDBLite consensus disorder prediction 206 220 - -
Cre11g1772 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Cre11g1772 371 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 20 353 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
Cre11g1772 371 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Cre11g1772 371 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Cre11g1772 371 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54712 PF00096 zf-C2H2 0.0045 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1772 - - - 0.0