Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1786 ATGGCTACTTGCATTCGAGATTTGGTAGAAGAAGAGGAACACATTTTCCGCAGCCAACTTCCTGAGGTCCAAGTGCCTGATAATATCACACTGCCGGAGTTTGTACTTCAGAATGCTGAATCATATGCTGAAAATGTGGCATTTGTGGAAGCCGTGAGTGGAAAGGCTTACACTTACCGCGAAGTTGTGAGAGACATAAATAGATTTTCCAAGGCCTTGTGCTCTCTGAGGTTAAAGAAGGGGCAGGTAGTTATTGTTGTTCTACCCAATGTTGCAGAATATGCCATTGTTGCTTTAGGGATAATGGCTGCTGGAGGTGTGTTTTCTGGGGTGAATCCAGCCGCTCATATATCAGAAATCAAAAAGCAGGTGGAGGTAGCAGAAGCCAAACTTGTTGTCACGAACAGCGCAAACTTTGAAAAGGTGAAGGAATTAAAGCTACCAGTGATCTTATTAGGGGAGGAACTAATTGAAGGTTCCATTAATTGGCACAAACTGCTTGAAGCTGCAGACCGTGCAGGCAGCAATTGTGTTAAAGAAGATATTAAGCAGACTGATTTATGTGCCCTCCCTTTCTCATCAGGCACCACAGGGGTTTCCAAAGGCGTTATGCTAACTCACCGAAATCTAATAGCTAATTTGTGTTCAACTCTCTCCGGTGTCCCAAAAGAAATAGAGGGCAAGGTCACGACGTTAGGCCTCATTCCGTTCTTCCATATTTACGGGATCACTGGAATATGTTGTGCTGCACTTAGAAACAAGGGAAAAGTTGTGGTGATGGGAAGATTTGATCTCAGGACCTTCATTAATGCCCTCATAACACAGGAGGTCACATTTGCTCCAATTGTTCCTCCTATCATCCTGGCTTTGGTTAAGAATCCTATTGTCGAAGAATTTGATCTTAGCGGTCTCAAACTTCAGGCTATCATGACTGCAGCTGCTCCGCTCGCACCCGAAGTTCAAACTGCCTTCGAAAGAAAGTTCCCAGGCGTGGACATTCAAGAGGCATATGGACTAACCGAGCATAGCTGCATCACTCTCAACTATGGAAGTATGGGCAAAGATAATCTCACTGCAAAGAAAAACACAGTTGGCCGCATTCTTCCTAATCTAGAAGTCAAATTCATCGATCCAGACAGCGGAAGGTCTCTGCCGAAGAACACTCCGGGTGAAATCTGTGTAAGAAGCCAGTGTGTGATGCAAGGTTACTACAAAAATGAAGAGGAGACTTCAAGGACGATCGATAACAAAGGCTGGATGCACACTGGGGACATTGGATATATCGATGACGATGGCGACGTGTTTATTGTGGATCGTATCAAGGAATTGATCAAGTACAAAGGCTTTCAAGTTGCTCCAGCTGAGTTAGAGGCAATCCTCCTTGCTCATCCCTCCATTGAAGATGCAGCTGTGGTGCCGCTGCCAGACGAAGAAGCCGGTGAGATCCCAGCAGCAAGTGTCGTGATGGCTCCGAATTCGAAAGAAACTGAAGATGAAATAATCAAACATGTTGCCTCAAATGTTGCACATTACAAGAAAGTTAGGCTCGTTCATTTTGTGGACACTATCCCGAAGTCGCCTTCTGGGAAAGTTATGAGAAGGTTGATCAAAGAGAAGATGCTCGAAAAGATTCGAGCTGAATCTGCCTCTTAG 1653 44.89 MATCIRDLVEEEEHIFRSQLPEVQVPDNITLPEFVLQNAESYAENVAFVEAVSGKAYTYREVVRDINRFSKALCSLRLKKGQVVIVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVEVAEAKLVVTNSANFEKVKELKLPVILLGEELIEGSINWHKLLEAADRAGSNCVKEDIKQTDLCALPFSSGTTGVSKGVMLTHRNLIANLCSTLSGVPKEIEGKVTTLGLIPFFHIYGITGICCAALRNKGKVVVMGRFDLRTFINALITQEVTFAPIVPPIILALVKNPIVEEFDLSGLKLQAIMTAAAPLAPEVQTAFERKFPGVDIQEAYGLTEHSCITLNYGSMGKDNLTAKKNTVGRILPNLEVKFIDPDSGRSLPKNTPGEICVRSQCVMQGYYKNEEETSRTIDNKGWMHTGDIGYIDDDGDVFIVDRIKELIKYKGFQVAPAELEAILLAHPSIEDAAVVPLPDEEAGEIPAASVVMAPNSKETEDEIIKHVASNVAHYKKVRLVHFVDTIPKSPSGKVMRRLIKEKMLEKIRAESAS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29452450 29454723 + CrPI670011_11g017860.1 Cre11g1786 513531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1786 550 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Cre11g1786 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 441 - -
Cre11g1786 550 Gene3D - 13 441 IPR042099 -
Cre11g1786 550 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Cre11g1786 550 CDD 4CL 25 534 - -
Cre11g1786 550 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Cre11g1786 550 Pfam AMP-binding enzyme 37 404 IPR000873 -
Cre11g1786 550 SUPERFAMILY Acetyl-CoA synthetase-like 20 543 - -
Cre11g1786 550 Gene3D - 442 544 IPR045851 -
Cre11g1786 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 536 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1688 Cre-Chr11:28275371 Cre11g1786 Cre-Chr11:29452450 2.60E-108 dispersed
Cre11g1786 Cre-Chr11:29452450 Cre11g1989 Cre-Chr11:31631836 5.90E-20 dispersed
Cre11g1786 Cre-Chr11:29452450 Cre10g1429 Cre-Chr10:27987157 9.90E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1786 K01904 - csv:101220731 983.015