Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1787 ATGCAAAGAAAGATGAAGAGAGGTTTGGTGGTGGTGGTGATGGTGGTGGTGGTTTGTTTATTGGGGAGTAGCTGGGTGGGAAAGGCAGAAGAAGAGAATTTGAAAGAGGGTTGCAGCAGTGATTTTGAGAAAGTGGTGAGTTGCTTCGAGTACGCGACGGGGAAGGCGGCGGGGCCGAGTAAGGAGTGCTGTGACTCAATAGAGGGTATAAAAGAAAGCAAGCCAAAATGCTTGTGTTTCTTCATACAGCAGACTCATAATGGAAATCAGCAGATTAAGAGCTTGGGCATTCAAGAGATTAAGCTTCTTCAGCTTCCTTCTGTTTGTCACTTGAAAAACTCTAGCGTTAGCTATTGCCCTAAGCTTCTGGGGCTACCCGCAAATTCACCCGACGCTGCTATTTTTAGCAATACAACAACACCAGCGACGCCGGCGTCCTCAACGACGACGAGGACAAGTCCCGACGGCAGTGGCGGAAGTAAGATAGTAGCCAATTCTCCGGCCGGACTGATGGCGGTGGCGATGGCGGTCGTGTTTTTCACAGCCTTCCTTTCGCCGATCACGCGTGAGGCGAATTGGGCCGGACAGAGGCCCACTTATACTGCACCATATAAGAAACGAACGAATTCTGGCAGCCCACTTGCGCTGATTCACGCAACAAAACGGCGTTCGTACTCCCTTTTACCCGACGAGCATCGCCGTTTCCGACTGAAAAAAAGATCCACGCAGCTATTCCGAGTCCAAGAACAAGATCTCTCCGTCATCGTCTTCCTGATAGGTCGCAATATGTCTCAGGTTGATAGCAGGAATTCCTCTGCGGCCAAACGTGCTAGAACTGATGGTAGCCGAAGGGAAGATGATTGGACTTGCCCTAGTTGTGGAAACGTCAATTTTTCATTTAGAACAACTTGCAATATGCGCAATTGCACTCAGCCACGTCCTGCTGATCATAATTCTAAATCTGCTGTCAAGCCCATTCAAGCTCCTCAGGGTTACTCCTATTCTGCCCCTTACATGGGGTCAGGTGCACCCTCTTCAATGTATCCTGGTGTACCACCATATGGTTCTTCCATATTCAATGGTTCATCTATACCTCCCTATGATGTGCCATTTTCTGGGGGATCAGCATATCATTACAACTACGGCAGCCGGTTTTCTGCGGGCAGCCCCTACAGACCCTTGCACTTATCTGGGCCTGCACCTTATTCAAGTGGATCTATGATGGGAAATAGTGCAGTGTATGGTATGCCACCCATAATGGATCGCTATGGCATGGCTTTGCCAATGGGCCCTGGTGCCATGGGTCCAAGGCCTGGTTTTTTTCCAGATGATATGTCTCAGAAGAAGGGTGCAGACACTACTCGTGACAATGATTGGGCATGCCCAAAATGTGGAAATATCAACTTCTCATTTAGAACTGTTTGTAACATGAGGAAGTGCAATACACCGAAACCTGGGTCACAGGGTTCCAAAAATGACAAAAGTTCTAAACAAAAGACGCCAGAGGGTAGCTGGAAATGTGAGAAATGTAACAACATAAATTATCCATTCCGAACCAAGTGCAACAGACAAAATTGTGGAGCAGACAAGCCAGCGGATTCAGAGAAATCCCCATCACCAGCACAGGATGAAAATGATCAGTGA 1644 48.05 MQRKMKRGLVVVVMVVVVCLLGSSWVGKAEEENLKEGCSSDFEKVVSCFEYATGKAAGPSKECCDSIEGIKESKPKCLCFFIQQTHNGNQQIKSLGIQEIKLLQLPSVCHLKNSSVSYCPKLLGLPANSPDAAIFSNTTTPATPASSTTTRTSPDGSGGSKIVANSPAGLMAVAMAVVFFTAFLSPITREANWAGQRPTYTAPYKKRTNSGSPLALIHATKRRSYSLLPDEHRRFRLKKRSTQLFRVQEQDLSVIVFLIGRNMSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAVKPIQAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGSSIPPYDVPFSGGSAYHYNYGSRFSAGSPYRPLHLSGPAPYSSGSMMGNSAVYGMPPIMDRYGMALPMGPGAMGPRPGFFPDDMSQKKGADTTRDNDWACPKCGNINFSFRTVCNMRKCNTPKPGSQGSKNDKSSKQKTPEGSWKCEKCNNINYPFRTKCNRQNCGADKPADSEKSPSPAQDENDQ 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29460529 29468430 - CrPI670011_11g017870.1 Cre11g1787 513532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1787 547 CDD AAI_LTSS 47 111 - -
Cre11g1787 547 Pfam Zn-finger in Ran binding protein and others 456 486 IPR001876 -
Cre11g1787 547 Pfam Zn-finger in Ran binding protein and others 501 531 IPR001876 -
Cre11g1787 547 Pfam Zn-finger in Ran binding protein and others 284 306 IPR001876 -
Cre11g1787 547 MobiDBLite consensus disorder prediction 526 547 - -
Cre11g1787 547 SMART zf_4 503 529 IPR001876 -
Cre11g1787 547 SMART zf_4 286 312 IPR001876 -
Cre11g1787 547 SMART zf_4 457 483 IPR001876 -
Cre11g1787 547 SUPERFAMILY Ran binding protein zinc finger-like 495 533 IPR036443 -
Cre11g1787 547 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 37 119 IPR036312 -
Cre11g1787 547 SUPERFAMILY Ran binding protein zinc finger-like 450 487 IPR036443 -
Cre11g1787 547 SMART aai_6 38 119 IPR016140 -
Cre11g1787 547 FunFam ranBP2-type zinc finger protein At1g67325-like 277 316 - -
Cre11g1787 547 Gene3D - 446 487 - -
Cre11g1787 547 Gene3D - 492 533 - -
Cre11g1787 547 Gene3D - 276 316 - -
Cre11g1787 547 PANTHER RNA BINDING PROTEIN 392 491 IPR034870 GO:0003712(PANTHER)|GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre11g1787 547 Pfam Probable lipid transfer 31 119 IPR016140 -
Cre11g1787 547 Gene3D - 35 116 IPR036312 -
Cre11g1787 547 MobiDBLite consensus disorder prediction 136 160 - -
Cre11g1787 547 MobiDBLite consensus disorder prediction 482 506 - -
Cre11g1787 547 SUPERFAMILY Ran binding protein zinc finger-like 279 315 IPR036443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1787 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005402 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40