Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1792 ATGGCTTCCGCTTGTGCTTCTTCCGCCATTGCGGCTGTGGCAATCTCTTCATCCAGTTCCCAGAAGAATGGGTGCCCCAAGGCTTCTAATTTCCTTACCGGCAAGAAGCTGAGGCTGAGAAACTTAACTGCCGCGGCTGCTGTTGCTCCTCGATCAGCTCCGGTATGCGCCGCAGCTGACCCCGACAGACCTCTCTGGTTCCCTGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTTCCCGGCGACTTTGGCTTTGACCCACTTGGTCTTGCGTCTGATCCGGAGAGTCTGAGATGGAACCAGCAGGCGGAGCTGGTACACTGCCGATGGGCAATGTTGGGGGCGGCCGGAATTTTCATCCCGGAATTTTTGACAAAGATCGGAATATTGAACACTCCGTCGTGGTACACCGCCGGTGAATTGGAATACTTCACCGACACCACCACTCTGTTCATAGTGGAACTCATTTTCATTGGTTGGGCCGAGGGTAGACGGTGGGCCGACATCCTCAAACCCGGCTGCGTCAACACCGACCCGATTTTCCCTAACAACAAGCTCACCGGAACCGACGTCGGATACCCGGGTGGGCTTTGGTTCGACCCGCTCGGGTGGGGAAGCGGGTCACCCGAAAAGATCAAGGAATTAAGAACGAAAGAGATAAAGAACGGGCGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACCGTCTTCGCCGCTTTCACACCAAAGTGA 807 56.63 MASACASSAIAAVAISSSSSQKNGCPKASNFLTGKKLRLRNLTAAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29505023 29507282 - CrPI670011_11g017920.1 Cre11g1792 513537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1792 268 FunFam Chlorophyll a-b binding protein, chloroplastic 73 258 - -
Cre11g1792 268 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
Cre11g1792 268 SUPERFAMILY Chlorophyll a-b binding protein 59 266 - -
Cre11g1792 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cre11g1792 268 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1548 Cre-Chr1:28670063 Cre11g1792 Cre-Chr11:29505023 4.90E-62 dispersed
Cre03g1766 Cre-Chr3:34534707 Cre11g1792 Cre-Chr11:29505023 1.20E-87 dispersed
Cre08g1539 Cre-Chr8:28010777 Cre11g1792 Cre-Chr11:29505023 4.50E-50 dispersed
Cre10g2308 Cre-Chr10:37320106 Cre11g1792 Cre-Chr11:29505023 1.50E-28 dispersed
Cre11g1792 Cre-Chr11:29505023 Cre11g2304 Cre-Chr11:34640981 4.00E-22 dispersed
Cre11g1792 Cre-Chr11:29505023 Cre06g2478 Cre-Chr6:32560685 5.20E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1792 K08908 - csv:101214055 517.694