Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1815 ATGTGGTACGTGTATTTGTATACTCGGAATCACAACTTTCCTTATTCTCTTCATCTGACTCCGTGGTCGTTTCGTCTTCGATTGACTAGGGTTCTCTCTACGCGTCTATCTAGGACTCCGCTCGCTTGCGGGACTTCTCTTCGATTCATACCGCTCTTCATCCAATCCTACTTTACAGATTACAGGGTTTTCTTTGGGAGCTATTGGGTGAGGTTTGGTATCTTGATGGCAGCGGGGAGAATGGGGGGTTATCGCGACTATGATATGAAGGACCGGGATTCCAGTTTTGATGTTTCGGGAGTAACTGCGAAAGAAGGATATGAACGGGGGCGGAGCGGTAACCGTGAAAGCAATAAAAGTCGAGGTCGGGATGTTAGAGACAGAATTAGGGTCCGGCAAAAGGATATCAAGGAGAGGGAAGCGGGTAATGGTAGTCTACGATCTTCGAGTAGAAGTGATTCTGGAAGCAGTGGTGGTATTGCTTCTCACGGGTTGAAGCAAAAGGTTTTGCTTGTCAGGACAATGGATAGGGAGCCGGGCGAGCTATCCAGTGAGAGTGGATCTGATGATGCCACTGAGTCCGGATTACGATTTAAAAATAGTGAGTCGGCAAAGGTGGTGGAGAATGGTATTCATTCTCCACTAGAGAAGAAGAGGAAGTTCTCACCAATAGTTTGGGACAGAGACGATAAGGAAGATGCCATTTCCACAAGAAATAAGGTTGCCAAGGCTGCGACTGCTTCATCTGTGCCGTCACCAAAGGAGCAGAAGCAGTCTCCTAATGCAACTTCGGACACTCTTGATGCTATGCCAACGGCAGGTAGAAGTAAGGATCTGGAGTACTTGCAACCTTCCTCTCTTGTTGAACCTTCTGCTGGGGGCCTTGGATCAGATGAATTCTCCGCAAGTGGTTCACCAATGATGCCATCTTCTGCTTTGCTTAGGAAACCATGGCAGAATGATCTTGAAGCAGAAAATTTTGGGGATGATGATTATGCTCCCACAAGAAACATTTCATCCTCTAGATGGGCTGCTGGAAATAACACTCCTGGTGATGAAGGTGAAATTTTAGACGAGGAAATGCCTAAAAGACGAAAGACAACACCAATTTCTGAGTCCTTGGAAGGCATCAAAGCACAAAGAAAATCATTAACTCCAGAGATTGGGGAGATAATGAGACAAGGCTCTGAAGCAGGGACAAGGTCATCTGAATCGACGGAACGTGGTGATCGGTCTCGATCATCTAGTGCAAATCATTACCTTGGTAATGATTTTGAGAAGGACGAAGGCATGGATCTTGGTGATGATATTCGTAGAATGGATACTAGCAGTAGCAGGTTGGATACTGATTCTGAGGATGAGACAGAATCTCCCGAGGAAGCAGAGCCTAGTGGCCCTCCTCCCCAACGAAGTGTAAATATGCTTCAGGGCTGTAGAAGTGTTGATGAATTTGAGAGGTTGAATAAGATCGATGAAGGAACTTATGGTGTTGTGTATAGAGCCAGAGACAAGAAGTCAGGGGAAATTGTTGCGTTGAAGAAGGTAAAAATGGAAAAGGAACGAGAAGGTTTTCCCATGACTTCTTTGAGAGAAATAAACATTCTTCTATCTTTTCATCACCCTTCAATTGTTGATGTAAAAGAAGTGGTGGTGGGCAGTAGTCTCGATAGCATTTTTATGGTAATGGAGTACATGGAGCATGATCTAAAAGCACTCATGGAGACAATGAAGCAGCCATTTAGTCAAAGTGAAGTCAAATGTCTGATGCTTCAGTTACTGGAGGGTGTTAAATACCTTCACGATAATTGGGTGCTCCATAGGGATTTAAAAACATCAAATTTACTTATGAATAACCAGGGAGAGTTGAAGATCTGTGATTTTGGACTAGCTCGGCAATATGGGAGCCCCTTGAAAACGTATACACATATGGTTGTTACACTTTGGTACAGGGCACCTGAACTTTTATTGGGAACAAGACAGTATTCTACAGCAATTGACATGTGGTCCTTGGGTTGTATTATGGCTGAATTATTGTCAAAGCAACCACTGTTTAATGGAAAAACTGAAGTTGATCAACTTGACAAGATATTCCGAACTCTAGGGACACCCAATGAAACAATTTGGCCTGGGTTTTCCAAGCTTCCAGGAGTAAGGGTGAACTTTGTTAAGCACCAGTACAACTTATTGCGTAAGAAATTCCCAGCGACATCATTTACCGGTTCGCCAGTTCTTTCTGATTCAGGATTTGATTTGTTGAACAAACTTCTAACTTACGATCCTGAGAAGAGAATAACAGCTGAGGCCGCTCTTAATCATGAATGGTTCTCAGAAGTTCCTCTTCCGAAGTCTAAAGAATTCATGCCTACTTTTCCTGCTCAGCATGCTCAGGACAGGCGTTTACGGAGAGTAATGAAGAGTCCAGACCCCTTAGAAGAGCAACGCAGAAAGGAGTTGCAGCAAGGGGAATTGGGAACATCTGGCTTCTTGACGTCAATTCTTCTCCTCTGGTCATCGTATAGAAAATGCTTCACTGACACGGCTTGCATGGCAAGAGATGGTTGGTGGGAAGGGGAGGGCGATCTTTGCTTCTCGTTGGCGAAGAATTTGACAGTTTCGTTAGTTTTTCAAAGTATCAAAGCTAGCAGGTTGAGGAGCCTACCTGCATTGCTCTGGAAGTTAATAACTTAG 2688 44.27 MWYVYLYTRNHNFPYSLHLTPWSFRLRLTRVLSTRLSRTPLACGTSLRFIPLFIQSYFTDYRVFFGSYWVRFGILMAAGRMGGYRDYDMKDRDSSFDVSGVTAKEGYERGRSGNRESNKSRGRDVRDRIRVRQKDIKEREAGNGSLRSSSRSDSGSSGGIASHGLKQKVLLVRTMDREPGELSSESGSDDATESGLRFKNSESAKVVENGIHSPLEKKRKFSPIVWDRDDKEDAISTRNKVAKAATASSVPSPKEQKQSPNATSDTLDAMPTAGRSKDLEYLQPSSLVEPSAGGLGSDEFSASGSPMMPSSALLRKPWQNDLEAENFGDDDYAPTRNISSSRWAAGNNTPGDEGEILDEEMPKRRKTTPISESLEGIKAQRKSLTPEIGEIMRQGSEAGTRSSESTERGDRSRSSSANHYLGNDFEKDEGMDLGDDIRRMDTSSSRLDTDSEDETESPEEAEPSGPPPQRSVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKSGEIVALKKVKMEKEREGFPMTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKALMETMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLMNNQGELKICDFGLARQYGSPLKTYTHMVVTLWYRAPELLLGTRQYSTAIDMWSLGCIMAELLSKQPLFNGKTEVDQLDKIFRTLGTPNETIWPGFSKLPGVRVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFSEVPLPKSKEFMPTFPAQHAQDRRLRRVMKSPDPLEEQRRKELQQGELGTSGFLTSILLLWSSYRKCFTDTACMARDGWWEGEGDLCFSLAKNLTVSLVFQSIKASRLRSLPALLWKLIT 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29755793 29760752 - CrPI670011_11g018150.1 Cre11g1815 513560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1815 895 MobiDBLite consensus disorder prediction 333 347 - -
Cre11g1815 895 MobiDBLite consensus disorder prediction 145 161 - -
Cre11g1815 895 MobiDBLite consensus disorder prediction 170 184 - -
Cre11g1815 895 FunFam Cyclin-dependent kinase G-2 567 806 - -
Cre11g1815 895 MobiDBLite consensus disorder prediction 211 238 - -
Cre11g1815 895 ProSiteProfiles Protein kinase domain profile. 484 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1815 895 SUPERFAMILY Protein kinase-like (PK-like) 476 781 IPR011009 -
Cre11g1815 895 MobiDBLite consensus disorder prediction 241 270 - -
Cre11g1815 895 FunFam cyclin-dependent kinase G-2 isoform X1 469 566 - -
Cre11g1815 895 Gene3D Transferase(Phosphotransferase) domain 1 567 806 - -
Cre11g1815 895 Pfam Protein kinase domain 484 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1815 895 Gene3D Phosphorylase Kinase; domain 1 469 566 - -
Cre11g1815 895 MobiDBLite consensus disorder prediction 108 144 - -
Cre11g1815 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1815 895 PANTHER CELL DIVISION PROTEIN KINASE 483 775 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0007346(PANTHER)
Cre11g1815 895 MobiDBLite consensus disorder prediction 356 371 - -
Cre11g1815 895 MobiDBLite consensus disorder prediction 422 451 - -
Cre11g1815 895 MobiDBLite consensus disorder prediction 185 199 - -
Cre11g1815 895 MobiDBLite consensus disorder prediction 105 473 - -
Cre11g1815 895 CDD STKc_CDC2L1 478 775 IPR045267 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1815 895 SMART serkin_6 484 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1815 K08818 - - csv:101209096 1327.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2316 Cre-Chr6:31101608 Cre11g1815 Cre-Chr11:29755793 3.10E-69 dispersed
Cre08g1663 Cre-Chr8:29127974 Cre11g1815 Cre-Chr11:29755793 5.20E-244 dispersed
Cre09g2280 Cre-Chr9:42001456 Cre11g1815 Cre-Chr11:29755793 2.50E-49 dispersed
Cre11g0944 Cre-Chr11:6755157 Cre11g1815 Cre-Chr11:29755793 3.90E-62 dispersed
Cre11g1815 Cre-Chr11:29755793 Cre11g2295 Cre-Chr11:34586839 6.00E-70 dispersed
Cre11g1815 Cre-Chr11:29755793 Cre05g0708 Cre-Chr5:6258340 8.40E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000852 1 16 2 1 1 1 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 2 2 3 2 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64565 PF00069 Pkinase 1.80E-75 CL0016 Cre PK