Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1816 ATGGATGATGCGACGGCTTCATCAGGGTCGTTGATCAATGGGCCTCCTTCCCGGACACCCTCTTCTTTTTCTTCCACCATTTTTACCAATTACCCTCTCATTTCTGCTCTCCTTGCCTTCGCTATTGCCCAGTCCATCAAGTTCTTCACCTCCTGGTATAAGGAAAGACGATGGGATTTTAAGAAACTAGTTGGATCTGGGGGAATGCCTTCGTCTCATTCTTCAACTGTTTCTGCTCTTGCTATAGCTATTGGGCTCCAAGAAGGCTTTGGAGCATCAGTCTTTGCTGTTGCATTGATCTTAGCATGTGTTGTTATGTATGATGCAACTGGTGTGAGATTACAAGCTGGACGCCAAGCAGAGGTTTTGAATCAAATTGTTTATGAGCTTCCTGCTGAACATCCTTTGGCTGAGAGCAGACCATTGCGAGAACTTCTTGGCCACACCCCTCCCCAGGTTATAGCTGGAGGCTTGCTTGGTCTTGAACAATGTGCTGAAGTAGATCAAGCAGTGCTATAG 519 46.44 MDDATASSGSLINGPPSRTPSSFSSTIFTNYPLISALLAFAIAQSIKFFTSWYKERRWDFKKLVGSGGMPSSHSSTVSALAIAIGLQEGFGASVFAVALILACVVMYDATGVRLQAGRQAEVLNQIVYELPAEHPLAESRPLRELLGHTPPQVIAGGLLGLEQCAEVDQAVL 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29766104 29768219 - CrPI670011_11g018160.1 Cre11g1816 513561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1816 172 MobiDBLite consensus disorder prediction 1 21 - -
Cre11g1816 172 Pfam Divergent PAP2 family 28 161 IPR003832 -
Cre11g1816 172 PANTHER ACID PHOSPHATASE/VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 20 161 IPR003832 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1816 K09775 - - csv:101208855 305.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1316 Cre-Chr2:16634877 Cre11g1816 Cre-Chr11:29766104 3.40E-19 dispersed
Cre02g1317 Cre-Chr2:16644196 Cre11g1816 Cre-Chr11:29766104 6.80E-23 dispersed
Cre05g0157 Cre-Chr5:1637597 Cre11g1816 Cre-Chr11:29766104 2.10E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1103 . . . . . . Bma14g01735 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g01725 . . . . . . . . . . . . . . . . . . . Cla11g01360 Cam11g1416 Cec11g1445 Cco11g1441 Clacu11g1575 . Cre11g1816 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000740 5 3 3 4 4 2 3 2 3 2 2 2 2 2 2 3 2 7 5 3 2 3 3 2 2 2 2 9 4 3 93