Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1835 ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCTGGGATTAGGTCCGCATTGAATTACGGTAAAGGAAGAAGCCATGAGGGCATAATCAAGTATGGGTTCTGCCTGGTCAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTCAGATTCAAGAACATGAATTGGGGCTCTTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTGCCTGCCTACTTACAAAAGCATTTGTTTTCTAACATCTTGAAAGAGGAAGAGTTTTGGGTTGACCCCAACAGCTCCATCTCAAAAGCATATGAAAAGACGGACCAGGCAATTCTATCCCACAGCTCTGACTTGGGTCGTGGTGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCGAAGACTATGGGTGGCCAATGTCGGTGATTCACGTGCAGTTCTTTCTAGAGGGGGCGAAGCTGTACAGATGACCATCGATCATGAGCCAAATACAGAACGTCGCACCATTGAGAATAAAGGTGGCTTCGTTTCAAACATGCCAGGAGACGTGCCACGAGTAAACGGCCAGCTAGCAGTTTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTGCGATCAGATCCTGACATACGTGATGTTAATGTAGACGCCAACACGGACATATTAATTCTCGCCAGCGACGGTCTTTGGAAGGTCATGGCCAATCAAGAAGCGGTTGATATTGCACGAAGAATTAAAGACCCATTGAAGGCTGCTAAGCAGTTAATAACTGAGGCTTTGGAGAAAGAGAGTAAAGATGATATATCATGCATTGTGGTTTTGTGTGCTATCGCATCTCTGGTTTCCCCTACTTGGAAAGCTGAAGAACAAATAGCTTACCCCTCCCCACTTAACAAATTCGATCCAATTCCGAAGCTTTTTTCTGCCAATGCTTCCGCGATCCTCTGCCAGATGCCAGATGCCATATGCCTCTTCACCCCACATTTCAATGTGTATGTGCCAGATCTCATCTACTTTGGGGACTCGATCACGACCCAGCCAGAGTGGTCTGACTCGTTCCAAAGCCGAGTTTATCATGTGTGTAATGGCTGCCAACTCAGTGAGGAAGCTAAGCCTCATTGGATTCAGCTATGGTGGGTTTGTTGGATATTGCTTGGCAGCGAGGTGGTGGAGAGGGTGGTGATATGTAGTGCAGGTGTTTGTATGGAAAAGAAAGACCTGAAAGAAGGTTTGTTCAGAATCTCAGACTTGGAGGAGGCAGCCAAGATTTTGGTGCCGCAAGATCCTAAGAAATTGAAAGAATTGGTGAAGTTTGCCCTCTTCAGGCCTCCTCCACTAGCATTGCTGCCCTCTTGTAGTAAGTTGTGGGATGGAGTGTTCTTGAGAAAGGACTCTATCTATAAGCACTTTAGAAAGTATAGGTTTTGGAAACTTCAAATTCAGTTTGTGACAATTGCTCTTTGGCAGGCTATGTGCAGTGAATATGTAGAAGAAAGGATAGAGTTAATCAAAGCTATTTCAAAAGACAGGAAACTATCAGACATCCCCAAGATCCATCAGCTGGTTTCATCTTCTCACATACATTCATTTCTTCAAGTTTTTTCTTTTCTACTACATCATGTGCAAAACAACCCTGATTTGAAGCAGCCAACTTTGATAATTTGGGAGAAGGTGACAAGGCATTTTGGGGAAAGCGCTCAACTGGTAGTAATCAAGAACGCAGGGCATGCTTGTGATTTGGAAAAGCCCAAGGAGTACTATCGTCACTTGAAGTCCTTCCTCGGCATCCAGCGGCGAAACCACAAATGA 1818 44.39 MDKLCCFNASYSGIRSALNYGKGRSHEGIIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGRRLWVANVGDSRAVLSRGGEAVQMTIDHEPNTERRTIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDVNVDANTDILILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALEKESKDDISCIVVLCAIASLVSPTWKAEEQIAYPSPLNKFDPIPKLFSANASAILCQMPDAICLFTPHFNVYVPDLIYFGDSITTQPEWSDSFQSRVYHVCNGCQLSEEAKPHWIQLWWVCWILLGSEVVERVVICSAGVCMEKKDLKEGLFRISDLEEAAKILVPQDPKKLKELVKFALFRPPPLALLPSCSKLWDGVFLRKDSIYKHFRKYRFWKLQIQFVTIALWQAMCSEYVEERIELIKAISKDRKLSDIPKIHQLVSSSHIHSFLQVFSFLLHHVQNNPDLKQPTLIIWEKVTRHFGESAQLVVIKNAGHACDLEKPKEYYRHLKSFLGIQRRNHK 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29988373 29996518 + CrPI670011_11g018350.1 Cre11g1835 513580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1835 605 Gene3D - 26 281 IPR036457 -
Cre11g1835 605 SUPERFAMILY PP2C-like 25 277 IPR036457 -
Cre11g1835 605 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Cre11g1835 605 PANTHER PROTEIN PHOSPHATASE 30 276 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre11g1835 605 SUPERFAMILY alpha/beta-Hydrolases 327 597 IPR029058 -
Cre11g1835 605 Gene3D alpha/beta hydrolase 383 599 IPR029058 -
Cre11g1835 605 SMART PP2C_SIG_2 42 278 IPR001932 -
Cre11g1835 605 CDD PP2Cc 30 278 IPR001932 -
Cre11g1835 605 SMART PP2C_4 23 276 IPR001932 -
Cre11g1835 605 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Cre11g1835 605 FunFam Probable protein phosphatase 2C 39 21 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0608 Cre-Chr7:3891444 Cre11g1835 Cre-Chr11:29988373 1.80E-87 dispersed
Cre09g0461 Cre-Chr9:4379641 Cre11g1835 Cre-Chr11:29988373 5.20E-34 dispersed
Cre11g1291 Cre-Chr11:11882183 Cre11g1835 Cre-Chr11:29988373 6.10E-30 dispersed
Cre11g1835 Cre-Chr11:29988373 Cre11g2195 Cre-Chr11:33662839 5.20E-86 dispersed
Cre05g1771 Cre-Chr5:29588318 Cre11g1835 Cre-Chr11:29988373 1.70E-52 transposed
Cre07g1213 Cre-Chr7:25420850 Cre11g1835 Cre-Chr11:29988373 8.70E-08 transposed
Cre10g1094 Cre-Chr10:21739945 Cre11g1835 Cre-Chr11:29988373 7.60E-120 transposed
Cre11g1835 Cre-Chr11:29988373 Cre04g1489 Cre-Chr4:33639058 2.90E-36 wgd
Cre11g1835 Cre-Chr11:29988373 Cre08g1046 Cre-Chr8:23629785 1.30E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1835 K17506 - csv:101213414 546.969