Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1849 ATGGCACTCTCCTTCCTCTCTTCCGTGCCTTCCTTTCTCCCTCTCCTTCCTCCTCCTCCTCAAGCCGCCCTCTCCCCCGCTACTGCATTTCCTTCGCACACTGTCAGAGTTCGTTGTGCTCAGATCCAAACGGATGCTAACAACGAGGATCGGTTTAGTAGAAGAGATGTTCTTCAAGGTTTTGGTGGTACTCTTGCTCTGGGATTAATGGTGAACTCTGACCTAATGGTGGAACCGGCTTATGCTGCTGATTTAATACAGCGAAGACAGCGATCTGACTTTTTATCAAATATCAAGGGGACCCTTTTTACAGCTATTAAGAAAAATCCAGACGTTGTTCCCTCCCTTTTAACATTGGCACTAAATGATGCCGTGACTTACGACAAGGCCACTAAATCTGGAGGGCCAAATGGATCCATCCGCTTCAGTTCAGAGATTTCCAGACCTGAAAATGAGAAGTTGTCTGCTGCTCTGAGTTTATTAGAGGAAGCAAAGAAGGAGATAGATTCTTATTCAAAGGGTGGACCTATTTCCTACGCAGATCTTATTCAATTGGCAGCACAAAGTGCCACTAAATCCACCTTTCTAGCGTCTGCCATCAGAAAATGTGGTGGGAATGAAGAAAAAGGAAATTTGTTATATACTGCGTATGGCTCCAACGGGCAGTGGGGCTTGTTCGAAAGGCAATTTGGAAGATCAGATGCTGAAGCGCCTGATCCTGAGGGAAGGGTTCCCATATGGGGGAAAGCTAGCGTGCAGGAAATGAAAGATAAGTTCTCTGCTATTGGATTTGGTCCCCGACAGCTAGCTGTTCTGTCTGCATTTCTGGGTCCTGATCAGGCAGCAACTGAGCAGTTACTAGCCTCAGATCCTGATGTTTTTCCATGGGTTCAAAAGTATCAACGTAGCCGTGAAACAGTATCTCAGACTGATTATGAGGTTGATCTAATAACCACTCTTACAAAAATAAGTAGCTTGGGACAGCAGATAAATTACGAGGCTTACACCTATCCAATAAATAACAGCAGGCTTCTCGATAATTCTGCTTTACGAGTCAAAAGTCTCAGCTGTAAGTACACATGGAATACCTACCATGGAGAACTGTATTATATTTACTCATAG 1122 44.56 MALSFLSSVPSFLPLLPPPPQAALSPATAFPSHTVRVRCAQIQTDANNEDRFSRRDVLQGFGGTLALGLMVNSDLMVEPAYAADLIQRRQRSDFLSNIKGTLFTAIKKNPDVVPSLLTLALNDAVTYDKATKSGGPNGSIRFSSEISRPENEKLSAALSLLEEAKKEIDSYSKGGPISYADLIQLAAQSATKSTFLASAIRKCGGNEEKGNLLYTAYGSNGQWGLFERQFGRSDAEAPDPEGRVPIWGKASVQEMKDKFSAIGFGPRQLAVLSAFLGPDQAATEQLLASDPDVFPWVQKYQRSRETVSQTDYEVDLITTLTKISSLGQQINYEAYTYPINNSRLLDNSALRVKSLSCKYTWNTYHGELYYIYS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30123344 30129094 - CrPI670011_11g018490.1 Cre11g1849 513594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1849 373 FunFam Thylakoid lumenal 29 kDa protein, chloroplastic 250 314 - -
Cre11g1849 373 SUPERFAMILY Heme-dependent peroxidases 80 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1849 373 Pfam Peroxidase 100 274 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1849 373 Gene3D - 83 247 - -
Cre11g1849 373 PRINTS Plant ascorbate peroxidase signature 131 141 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1849 373 PRINTS Plant ascorbate peroxidase signature 145 169 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1849 373 PRINTS Plant ascorbate peroxidase signature 113 128 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1849 373 PRINTS Plant ascorbate peroxidase signature 273 298 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1849 373 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 281 339 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009535(PANTHER)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Cre11g1849 373 Gene3D - 248 314 - -
Cre11g1849 373 CDD plant_peroxidase_like 98 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1849 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1849 Cre-Chr11:30123344 Cre03g0516 Cre-Chr3:3701048 7.60E-11 dispersed
Cre11g1849 Cre-Chr11:30123344 Cre04g1662 Cre-Chr4:34969056 1.90E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g445 . . . Bda03g00483 . Bpe04g00436 . . . . Cma01g01622 Cma09g00570 Car01g01236 . . Cpe06g00433 . . . . . . . . . . . . . . . Cone4ag1323 . . . . Csa03g04459 Chy04g00242 . . . . . . . . . Sed13g2145 Cmo01g01665 Cmo09g00557 . . . Car09g00497 . Cpe02g00362 Bhi09g02455 Tan01g3804 Cmetu04g1099 . Hepe01g2140 Mch11g0679 . Cla11g01395 Cam11g1451 Cec11g1479 Cco11g1476 Clacu11g1610 Cmu11g1429 Cre11g1849 . . . Cme04g00270
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009724 1 2 0 0 1 0 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 0 1 3 1 1 32