Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1853 ATGGCGCTCCGTTTTGAGATTATGGGAAGATTTAATCGTGCTCGTGCTGCACGACTCACTCTCCCCCACTTTATCTGCCAAACACCTCTGTTTATGCCAGTGGGAACACAAGGGACAATTAAAGGGTTGACAACTCAGCAGCTTGAAGAGATTGGTTGCCAAATTATACTTGGAAATACATATCATTTAGCACTTCGTCCCACTTCCGAGCTTATTGATGAATTGGGAGGTCTCCACAAGTTTATGAACTGGCCCAGAGCAATGCTTACTGATTCTGGCGGGTTTCAAATGGTTTCATTGTTACATTTAGCTGATATCACCGAAAAAGGTGTAACATTTCAGTCTCCAGTTGATGGGAAGCCAATGCTTTTGACTCCTGAGGAATCAATTCAAATTCAGAACAGAATAGGAGCAGATATTATTATGGCTCTTGATGATGTAGTAAAAACAACCATCACAGGTCCAAGAATTGAGGAGGCCATGTACCGTACTCTTCGTTGGATAGACAGATGTATAGCAGCACACAAGAGACCTCATGAGCAGAATTTATTTGGTATTGTGCAAGGTGGTTTGGATCCAGTCCTAAGGGACATATGCGTTAGAGGCTTGGTTGACCGAAATTTACCAGGGTATGCGATTGGCGGTCTGGCAGGTGGTGAAGATAAAGATTCATTTTGGCGTGTTGTTGCCCAATGCACTGCTTCACTGCCTGAGGACAAACCTAGATATGTTATGGGTGTTGGTTATCCACTGGACATTGTCGTATGTAGTGCTTTAGGTGCCGACATGTATGACTGTGTTTATCCAACCCGTACTGCTCGTTTTGGCACAGCACTCATACCTGAGGGAGTTCTAAAACTTAAACACCAAGCGATGGCTGATGATACTCGTCCCATTGATCCTACATGTGATTGCATGGTCTGCAGGAACTATACTAGGGCCTACATCCATTGTCTTGTTACAAAAGATGCTATGGGTTCTCAGCTACTCTCATTTCACAATTTGTATTACATGATGAAGCTTAGCAGAGATCTACATTCTTCAATTGTTCAGGGGCAATTCCCAGAGGCGATGTCCCGCAATGGGTCTGCAATGCTATGGAGGTTGCCGGTATTGACATCTCCTCCTGTTGTGCTCCTTTGTCTTCATCCGTGGATAAACCAAACCATCAAACCCGAAAATTGGTCAGTGATAATGAAGAGATTTGCCCACTCAGATTCCTTGGATTCTTTCATCACCATCTTCTCCCCTAATGATCAACCGAGCTCCAAAACCATAGGCGGCTACAGCAAGGAGTTTCAAGCAATGTTAGACAGTTTGGAGGAAGAAGACAACAGCGAAGACGGCGGCAACGGTGGCGGGTCAGCACCGGAGAGAAAACGGCGGCTGAAGGTGGATCAAGTGAAGGTCTTGGAGAGGCATTTTGAAGTGGAAAACAAGTTAGAACCAGAGAGAAAAATGAAGATTGCAGCTGAATTAGAGCTTGAACCAAAGCAAGTTACAATTTGGTTCCAAAATCGCAGAGCCCGTTGGAAAACAAAGCAATTAGAGAGAGATTATGGAGTTCTAAAAGTCAATTACGATGCTCTTAAACTGGACTATGATGTTCTTGAGAAAGAGAATGCTTCTCTTGCTTCAAAGGTCAAAGAGTTGAGGGAAAAAGTAAGGAGAGAAGGAACAGAGATGAAAATTCAAAGAGAAGTGAAAAATGGGTCAGTGGAGAGAGATTCAAACAGAGATGGGAATTCATATATTTCCATGTTGAATTGCTTTGAATTTTCTGGGAAAGTTTATGAGAATCAAACCCAGTTTACAAAGGCAATGAATGATGATGATGATGATCAAAGTTTGGTTAATATAGAAGAGCCTTGCAATTTCTGTTCTGTTGATCAAGCTCCCTCTCTCCACTGGTAA 1914 43.0 MALRFEIMGRFNRARAARLTLPHFICQTPLFMPVGTQGTIKGLTTQQLEEIGCQIILGNTYHLALRPTSELIDELGGLHKFMNWPRAMLTDSGGFQMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTLRWIDRCIAAHKRPHEQNLFGIVQGGLDPVLRDICVRGLVDRNLPGYAIGGLAGGEDKDSFWRVVAQCTASLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALIPEGVLKLKHQAMADDTRPIDPTCDCMVCRNYTRAYIHCLVTKDAMGSQLLSFHNLYYMMKLSRDLHSSIVQGQFPEAMSRNGSAMLWRLPVLTSPPVVLLCLHPWINQTIKPENWSVIMKRFAHSDSLDSFITIFSPNDQPSSKTIGGYSKEFQAMLDSLEEEDNSEDGGNGGGSAPERKRRLKVDQVKVLERHFEVENKLEPERKMKIAAELELEPKQVTIWFQNRRARWKTKQLERDYGVLKVNYDALKLDYDVLEKENASLASKVKELREKVRREGTEMKIQREVKNGSVERDSNRDGNSYISMLNCFEFSGKVYENQTQFTKAMNDDDDDQSLVNIEEPCNFCSVDQAPSLHW 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30166727 30177532 - CrPI670011_11g018530.1 Cre11g1853 513598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1853 637 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 2 360 - GO:0005829(PANTHER)|GO:0008479(PANTHER)|GO:0101030(PANTHER)
Cre11g1853 637 ProSiteProfiles 'Homeobox' domain profile. 454 514 IPR001356 GO:0003677(InterPro)
Cre11g1853 637 NCBIfam tRNA guanosine(34) transglycosylase Tgt 5 355 IPR004803 GO:0008479(InterPro)|GO:0101030(InterPro)
Cre11g1853 637 SUPERFAMILY Homeodomain-like 449 516 IPR009057 -
Cre11g1853 637 Coils Coil 527 554 - -
Cre11g1853 637 Hamap Queuine tRNA-ribosyltransferase [tgt]. 3 364 IPR004803 GO:0008479(InterPro)|GO:0101030(InterPro)
Cre11g1853 637 ProSitePatterns 'Homeobox' domain signature. 489 512 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre11g1853 637 NCBIfam tRNA-guanine transglycosylase 5 356 IPR002616 GO:0006400(InterPro)|GO:0016763(InterPro)
Cre11g1853 637 CDD homeodomain 459 515 IPR001356 GO:0003677(InterPro)
Cre11g1853 637 Gene3D - 450 519 - -
Cre11g1853 637 Pfam Homeobox associated leucine zipper 514 555 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g1853 637 Pfam Homeodomain 460 512 IPR001356 GO:0003677(InterPro)
Cre11g1853 637 MobiDBLite consensus disorder prediction 441 461 - -
Cre11g1853 637 SMART HOX_1 457 518 IPR001356 GO:0003677(InterPro)
Cre11g1853 637 Gene3D - 1 363 IPR036511 GO:0006400(InterPro)|GO:0016763(InterPro)
Cre11g1853 637 Pfam Queuine tRNA-ribosyltransferase 13 358 IPR002616 GO:0006400(InterPro)|GO:0016763(InterPro)
Cre11g1853 637 SUPERFAMILY tRNA-guanine transglycosylase 1 357 IPR036511 GO:0006400(InterPro)|GO:0016763(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1853 K00777 - - csv:101206917 723.391
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1017 Cre-Chr10:19305654 Cre11g1853 Cre-Chr11:30166727 9.00E-32 dispersed
Cre10g1576 Cre-Chr10:29786220 Cre11g1853 Cre-Chr11:30166727 3.50E-24 dispersed
Cre10g2062 Cre-Chr10:35320509 Cre11g1853 Cre-Chr11:30166727 4.30E-15 dispersed
Cre11g1853 Cre-Chr11:30166727 Cre04g1476 Cre-Chr4:33533860 4.60E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g449 . . . . . . . . . . Cma01g01625 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02252 Csa03g04463 Chy04g00238 . . . . . . . . . . Cmo01g01669 . . . . . . Cpe02g00358 Bhi09g02462 Tan01g3812 . . Hepe01g2145 . . Cla11g01398 Cam11g1455 Cec11g1483 Cco11g1480 Clacu11g1614 Cmu11g1433 Cre11g1853 . . . Cme04g00266
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005915 1 2 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 6 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54714 PF01702 TGT 1.70E-145 No_clan Cre TF