Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1860 ATGATTCCAATTATGGCAATAAGGAAGAAGAATCACGTTCTCATTTGCCAATTATTGTTACTTTTGTTGCCACTGCCGCCGCCGCCGGCCGCCGCGCAGGAAACCGGAGCCGGAACGATACCGATATCGTCGGAACCGGAGGTTAGTAAAAACATGGCGATTGCATTCGTTGCGCTGATTTCTGGCTTTTTCATCCTTGGCATCATCTCTATTTACACGCGCCGCTGCAGAGAGAGGAGGTTCCGAGGTGCAGGAATCGGAATAGGTAGCGGAGGTGGTGGCGGCGGCGTGCCGTGGAGGCCGTCGCGTGGACTCGATCCGGCGTTCATAGCGACATTTCCAACTTTTGTGTACTCGACGGTGAAAGGGCTGAAAATCGGGAAAAGCTCACTGGAATGTGCTGTTTGCTTGAATGAATTCGAAAATAGCGATAGCCTGCGTTTAATTCCGAATTGTAGCCATGTTTTTCACTCTGCTTGTGTTGATGCTTGGTTAGTTTCACACTCGACTTGCCCCGTTTGCAGAGCCAATCTCTGTCCTAAACCTGGTGAAGTAACATTGTCGATCGTTAATTTCGATCCGTCCACCGGCTCAGAAATAATCGGAGTTGAACGGTCGTCGACGCCATCACCATCACCGCCGAACCACGTGTCGATTCCGATGGTGGATGACTGCCATGCCGGAGAAGGAGCGGCAACGGAGACAAATGCGACGAATCCAAGTCCGGTGGCGAACCGGAGTACACCGACGCGGTCGAGGTCGCTGGGATGGCGGTTGAGCGGAATATTCCAGCGGTCTAACTCGACCGGGCATGAGCGGTTTACTCTAAGGTTACCGGAGGCAGTTCGGAGTCAGTTGATGAACTCGACGCTGAACCGGACCAGAAGCTGGGCGGAGTTGCCGAGAGTGCAGAGTTTGCGACGGGGATACCGGGGTGGAATCGGAGAAAATGGCGGGTGGAGGAATTTCCTACGGCGGACGTTTTCGGTTCCGGCGTCTGTAGTCGGAAGCGCTGCCGGAACCGATCCGGTGAATGAGGACTTCGGCGAACGATCGTTTGCGCGGCTGAGGCCAAGTGGAAATGGTCCGAGTACAACGGCGGATTAG 1107 54.29 MIPIMAIRKKNHVLICQLLLLLLPLPPPPAAAQETGAGTIPISSEPEVSKNMAIAFVALISGFFILGIISIYTRRCRERRFRGAGIGIGSGGGGGGVPWRPSRGLDPAFIATFPTFVYSTVKGLKIGKSSLECAVCLNEFENSDSLRLIPNCSHVFHSACVDAWLVSHSTCPVCRANLCPKPGEVTLSIVNFDPSTGSEIIGVERSSTPSPSPPNHVSIPMVDDCHAGEGAATETNATNPSPVANRSTPTRSRSLGWRLSGIFQRSNSTGHERFTLRLPEAVRSQLMNSTLNRTRSWAELPRVQSLRRGYRGGIGENGGWRNFLRRTFSVPASVVGSAAGTDPVNEDFGERSFARLRPSGNGPSTTAD 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30253030 30254136 + CrPI670011_11g018600.1 Cre11g1860 513605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1860 368 Pfam Ring finger domain 132 175 IPR001841 -
Cre11g1860 368 SUPERFAMILY RING/U-box 128 183 - -
Cre11g1860 368 SMART ring_2 133 174 IPR001841 -
Cre11g1860 368 MobiDBLite consensus disorder prediction 232 252 - -
Cre11g1860 368 CDD RING-H2_EL5-like 132 175 - -
Cre11g1860 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 44 232 - -
Cre11g1860 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 180 IPR013083 -
Cre11g1860 368 FunFam E3 ubiquitin-protein ligase ATL6 98 181 - -
Cre11g1860 368 MobiDBLite consensus disorder prediction 231 252 - -
Cre11g1860 368 MobiDBLite consensus disorder prediction 336 368 - -
Cre11g1860 368 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1860 K10664 - - csv:101206673 542.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1074 Cre-Chr8:23864726 Cre11g1860 Cre-Chr11:30253030 7.70E-72 dispersed
Cre09g2332 Cre-Chr9:42602877 Cre11g1860 Cre-Chr11:30253030 1.50E-11 dispersed
Cre11g1690 Cre-Chr11:28307559 Cre11g1860 Cre-Chr11:30253030 2.70E-20 dispersed
Cre02g1914 Cre-Chr2:32469300 Cre11g1860 Cre-Chr11:30253030 3.90E-47 transposed
Cre09g1127 Cre-Chr9:12028088 Cre11g1860 Cre-Chr11:30253030 6.20E-23 transposed
Cre10g0877 Cre-Chr10:9997917 Cre11g1860 Cre-Chr11:30253030 8.60E-11 transposed
Cre11g1860 Cre-Chr11:30253030 Cre04g1472 Cre-Chr4:33499345 2.70E-24 wgd
Cre11g1860 Cre-Chr11:30253030 Cre08g1072 Cre-Chr8:23825654 6.60E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g460 . . Bda01g00896 Bda03g00477 . . . . Cmo05g00544 . . . . . Sed14g0990 Cpe06g00443 . Bhi04g00792 Tan02g2428 Cmetu05g0584 . Hepe10g0467 . Lcy13g1532 . . . . . . . . Cone7ag1259 Cone17ag1200 . Lsi04g02261 Csa03g04472 Chy04g00229 Cme03g01838 Blo17g00109 . . . Bpe02g01132 Bpe14g00468 . Bma02g00126 Sed06g1552 . Cmo09g00565 . Cma05g00516 Car05g00467 Car09g00510 Cpe11g00456 . Bhi09g02473 Tan01g3822 Cmetu04g1810 . Hepe01g2153 Mch11g0691 . Cla11g01406 Cam11g1463 Cec11g1491 Cco11g1487 Clacu11g1624 Cmu11g1441 Cre11g1860 Lsi08g00991 Csa02g02176 Chy03g01341 Cme04g00255
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002449 3 2 1 1 2 1 3 2 2 2 1 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59