Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1871 ATGGCTTGTGGTAATGTCTACGACTCCGGCCGGTTTTCGATCCGTCATTCTTTATCTAAAGCATCTAGATTCTTTGACTTGATTGAGAAGCATCTTCAAAACACTTCAACTCTACCAAAATCCATCACTGGAGCTCTTACAGATTGTCAGTATCTTGCTCAACTGAATATCAATTTCTTGTCGAATTCGTTTCGGGCCGTTAATGGCACCGATAAAAAGCTAACTTACTCAAAAGCTGATTATATCCAAAGTCTTCTTAGTGCCATTTTAACCAACATTGATACCTGTCTTGATGGTCTAAACACTGTAGCCTCAGGTTCAAGTTTGGAGAAAGATTTGTTAGCCCCACTTATTGATTGTACCAAATCATACAGTCTTTCACTTGATCTTTTTACAAAGGGTTGGGTTCCTAGGAGGAATAGAAACAGAACACTTGGGAAAAAACACCAGCAGTTTAGGAAAGGACCGGTACCGTTGAGAATAATGTCGAGACGCGACCGGGAAGTTTACGACTCAGTGGTGAATCGAAGAAAGCTTTCTTCTTCATCAGATGACGGAGTTTTGGTTAGTGGCATTGTAGTTGTGAGTCAAGATGGCAAAGGAGACTTCCTTAACATTACAGAAGCTATTAATGCAGCTCCAAATAACGTTCTTGCTGCCAATGGCTACTTCTTGATTTACATTATGGCTGGTGTTTACCAAGAGTATGTGTCTATCCCTTCAAAGAAGAAGTACTTGCTGATGATTGGAGATGGTATAAATCAGACTATCATCACAGGCAACCGGAGCGTCGCGGACGGATGGACGACGTTCAACAGTGCAACTTTTGCTGTAGCAGCAGAAGGATTCATGGCAGTAAACATAACCTTCCAAAACACAGCTGGACCCATCAAGGGCCAAGCAGTTGCATTAAGAAGTGGAGCTGATATGTGTGTTTTTTACAGCTGCAGTTTTGAAGGCTACCAAGACACCTTATACACTCATTCCCTCAGACAATTCTTTAGAGAATGTGATATTTATGGCACAGTAGACTTCATATTTGGAAATGCTGCTGTTGTCTTCCAAAACTGTAACATACATCCCCGTCTTCCCCGCCCCGGTCAGACCAACATGATCACGGCTCAAGGCCGATCGGATCCGAACCAAAACACTGGGACTTCGATCCACAACTGCACAATCCGATCTGCAAGTGATTTGGCTGCAAGTAGTAGCTATATGAACAAGACATATTTGGGAAGGCCATGGAAGCAATATTCAAGAACAGTGTATATGCAAACATTTATAGATGAGTTTATAAATCCTGGTGGTTGGGATCCATGGTCAGGGGAATATTTGAGCACATTGTATTATGGAGAGTATAATAATAGAGGAGGTGGATCAAATACAAAGAACAGAGTTAATTGGTCAGGTTTTCATGTGATTAATAATGCAACAGATGCTGCTTATTTTACAGTTTCAATTTTCTTGGTTGGGGATGTGTGGTTGCCTCCAACATGTGTGCCTTACACTGGAGGCTTGATATAA 1524 41.6 MACGNVYDSGRFSIRHSLSKASRFFDLIEKHLQNTSTLPKSITGALTDCQYLAQLNINFLSNSFRAVNGTDKKLTYSKADYIQSLLSAILTNIDTCLDGLNTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRRNRNRTLGKKHQQFRKGPVPLRIMSRRDREVYDSVVNRRKLSSSSDDGVLVSGIVVVSQDGKGDFLNITEAINAAPNNVLAANGYFLIYIMAGVYQEYVSIPSKKKYLLMIGDGINQTIITGNRSVADGWTTFNSATFAVAAEGFMAVNITFQNTAGPIKGQAVALRSGADMCVFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIHPRLPRPGQTNMITAQGRSDPNQNTGTSIHNCTIRSASDLAASSSYMNKTYLGRPWKQYSRTVYMQTFIDEFINPGGWDPWSGEYLSTLYYGEYNNRGGGSNTKNRVNWSGFHVINNATDAAYFTVSIFLVGDVWLPPTCVPYTGGLI 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30372525 30375191 - CrPI670011_11g018710.1 Cre11g1871 513616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1871 507 Gene3D Invertase/pectin methylesterase inhibitor family protein 3 133 IPR035513 -
Cre11g1871 507 ProSitePatterns Pectinesterase signature 2. 339 348 IPR033131 -
Cre11g1871 507 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 5 133 IPR035513 -
Cre11g1871 507 SMART PMEI_2 1 130 IPR006501 GO:0004857(InterPro)
Cre11g1871 507 Pfam Pectinesterase 193 492 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre11g1871 507 PANTHER PECTINESTERASE 14 497 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre11g1871 507 CDD PMEI-like_3 11 135 - -
Cre11g1871 507 Gene3D - 189 506 IPR012334 -
Cre11g1871 507 FunFam Pectinesterase 188 506 - -
Cre11g1871 507 Pfam Plant invertase/pectin methylesterase inhibitor 11 129 IPR006501 GO:0004857(InterPro)
Cre11g1871 507 SUPERFAMILY Pectin lyase-like 189 505 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0451 Cre-Chr2:1773530 Cre11g1871 Cre-Chr11:30372525 3.90E-144 dispersed
Cre03g0631 Cre-Chr3:5201241 Cre11g1871 Cre-Chr11:30372525 1.30E-78 dispersed
Cre10g0810 Cre-Chr10:8413219 Cre11g1871 Cre-Chr11:30372525 4.00E-92 dispersed
Cre10g2082 Cre-Chr10:35497741 Cre11g1871 Cre-Chr11:30372525 1.40E-19 dispersed
Cre11g0517 Cre-Chr11:2126606 Cre11g1871 Cre-Chr11:30372525 4.50E-82 dispersed
Cre11g1871 Cre-Chr11:30372525 Cre09g0531 Cre-Chr9:4970996 2.00E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1871 K01051 - csv:101205879 910.212