Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1874 ATGTTCCCAAAGCCCCACCACCAACCACCGCCCCATTCTCAGCCTTTTCCCCGTTCTTTTTCCGTCGCCGCCACTCCGCCGTCGCGTGATTCACCAGCCTCCGCCGATGAGGATTCCGCGGCCGGTCCCTCGCCTCTCGCTCACGCCATGGTTCTCAAAGAACCGACCTCCACCGGCGACGGAGCTTCCATCGAGGTTGTACGCCGCCCCCGCGGCCGCCCGCCGGGATCCAAGAACAAGCCGAAGCCAGCGGCCGTCGTTGTCGCCGGCCGCGAGGCCGAGCCGGCGATGAGTCCTTATGTACTCGAAGTCCCCGGCGGCAGCGATGTCGTCGAATCGATATCCCGATTTTGCCGCCGCAGAAACACAGGGCTCTGTATTCTCAACGCTTACGGAACCGTCGCTGACGTCACTCTCCGGCAACCGTCGTCGTCTCCGGTCAGTACAGTCACTTTCCATGGACGATTCGATATTCTATCCGTCTGCGCAACTTTTGTTCCTCACACGACGTCGTTTCCAATTCCTAACGGATTCACCATCACGCTAGCCGGACCGCAGGGACAGATCTTCGGCGGCTTGGTTGCCGGATCTTTAATCGGCGTCGGAACCGTCTATGTTATAGCCGCTTCATTCAACAATCCGTCGTATCAGCGGCTGCCATCGGAGGATGAGGTCAGAAAATTAACCTTCAGCGATGTTGAAGAAGCTCACTCACCGATCTCTGGCGGCAAAGATAGCGAAAACACCGCCGCAGCCGCCGCCACAGAGACCTGCGGTTTGCTGCCGATGTACAGCACACACTCCTCTTCCGACGTAATTTGGACTCCGGCCGCTAGACAACCGCCTCCACCGCACCATCGTCAGTACTAA 870 59.08 MFPKPHHQPPPHSQPFPRSFSVAATPPSRDSPASADEDSAAGPSPLAHAMVLKEPTSTGDGASIEVVRRPRGRPPGSKNKPKPAAVVVAGREAEPAMSPYVLEVPGGSDVVESISRFCRRRNTGLCILNAYGTVADVTLRQPSSSPVSTVTFHGRFDILSVCATFVPHTTSFPIPNGFTITLAGPQGQIFGGLVAGSLIGVGTVYVIAASFNNPSYQRLPSEDEVRKLTFSDVEEAHSPISGGKDSENTAAAAATETCGLLPMYSTHSSSDVIWTPAARQPPPPHHRQY 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30408104 30408973 - CrPI670011_11g018740.1 Cre11g1874 513619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1874 289 CDD DUF296 99 211 IPR005175 -
Cre11g1874 289 MobiDBLite consensus disorder prediction 1 84 - -
Cre11g1874 289 Gene3D - 98 237 - -
Cre11g1874 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cre11g1874 289 MobiDBLite consensus disorder prediction 1 16 - -
Cre11g1874 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 54 247 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre11g1874 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Cre11g1874 289 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Cre11g1874 289 FunFam AT-hook motif nuclear-localized protein 98 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1150 Cre-Chr11:9130236 Cre11g1874 Cre-Chr11:30408104 4.00E-32 dispersed
Cre11g1874 Cre-Chr11:30408104 Cre08g1113 Cre-Chr8:24321814 6.40E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1874 - - - 0.0