Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1877 ATGGACTGCTTGACCTCCTACTCTTTACCCGCCGCATTTGCCTTCTCTAAGCCCTCCGTTTCAGCTTCTAAGCCGCCACTTCTCGCCGTCGCTCGCGGAGCCATGCCGGCGTCTGGAGTTCTCAGAGCATCTCGCACCGCCGATGCGCCGCCGTCCGTCGACGACTCTCCGGAAAACCGCAGTGACAAGGAGGTTAAGCTTTGGGGCGGTCGTTTCGAGGAGAGCGTCACCGATGCAGTTGAGCGATTTACCGAATCGATCTCCTACGATAAGCAGCTTTACAAGCACGATATCAGAGGGAGTCGAGCTCATGCTACCATGCTAGCTAAACAGGGACTGATGAGTGTTGATGAAAGGGATAGTATTCTTGAGGGTTTGGATGAAATTGAGAGGCGCATTGAAAGTGGTGAGTTTGTTTGGAGAACAGATAGGGAGGATGTTCATATGAACATTGAGGCTGCCTTGATTGACATGATTGGTGAACCTGCAAAAAAACTACATACTGCTCGAAGCCGTAACGATCAAGTTCTTACTGATTTTCGATTATGGTGCCGGGATGCAATTGATACTATATTAGATGCTATTAAGTACCTGCAAGTTTCCATGGTAATTCTGGCATTGAAGAATGAGGGATTAATCGTTCCGGGCTATACACATTTACAAAGAGCACAACCTGTTCTACTCCAGCATCTGCTCTTAGCATTTGTAGAGCAGCTTGAAAGAGATGCTGGTCGTTTGTCGGATTGCAGAGTTAGGCTAAATCTTTGCCCGCTAGGTGCATGTGCGCTGGCTGGCACAGGCCTTCCCATTGATCGTTTTATGACTGCTGAGGCTTTAGGGTTCACCGCTCCTTTGAGAAACAGCATCGACGCAGTTTCTGATCGAGATTTTGCCTTAGAATTTCTTTCTGCCAATGCAATTACCGCCATCCATCTTTCACGGCTAGGAGAAGAATGGGTGTTGTGGGCTTCTGAAGAATTCGGATTTATAACACCCAATGATTCTGTTTCAACTGGAAGTAGCATAATGCCTCAGAAGAAAAATCCAGACCCAATGGAACTTGTTCGTGGGAAGTCTGCCAGAGTCATAGGAGACTTGGTCACCACTCTCACGTTATGCAAAGGTCTTCCTCTGGCCTACAATCGTGATTTGCAGGAAGACAAGGAACCTGTATTTGACAGCGTAAAGACAATATTGGGGATGCTTGAAGTGTCAGCTGAGTTTGCTCAGAATATTTCTTTCAATCGGGAGAGAATAGAAAAGGCTTTACCTGCTGGTTATCTTGATGCCACAACACTTGCTGATTACCTCGTGAAGAAGGGAATACCTTTCAGAACAGGTCATGACATAGTTGGAAAATCTGTTGCCTTGTGTGTCACTAAGAATTGCTGCCTCCAGGACTTGAGTCTGGATGAGCTAAGAAGCATAAGTCCAGTATTTGAAGAGGATGTTTACAAGTTTCTCGGGGCCGAGAATGCGATTAATAAATTTTGTTCGTATGGTTCCACAGGAGCAGCCTGTGTCGCTACTCAAATCGAATACTGGATAAATAAACTCCAAATCAATTTGTAG 1572 46.18 MDCLTSYSLPAAFAFSKPSVSASKPPLLAVARGAMPASGVLRASRTADAPPSVDDSPENRSDKEVKLWGGRFEESVTDAVERFTESISYDKQLYKHDIRGSRAHATMLAKQGLMSVDERDSILEGLDEIERRIESGEFVWRTDREDVHMNIEAALIDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDTILDAIKYLQVSMVILALKNEGLIVPGYTHLQRAQPVLLQHLLLAFVEQLERDAGRLSDCRVRLNLCPLGACALAGTGLPIDRFMTAEALGFTAPLRNSIDAVSDRDFALEFLSANAITAIHLSRLGEEWVLWASEEFGFITPNDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTTLTLCKGLPLAYNRDLQEDKEPVFDSVKTILGMLEVSAEFAQNISFNRERIEKALPAGYLDATTLADYLVKKGIPFRTGHDIVGKSVALCVTKNCCLQDLSLDELRSISPVFEEDVYKFLGAENAINKFCSYGSTGAACVATQIEYWINKLQINL 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30438875 30444772 - CrPI670011_11g018770.1 Cre11g1877 513622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1877 523 ProSitePatterns Fumarate lyases signature. 339 348 IPR020557 GO:0003824(InterPro)
Cre11g1877 523 Hamap Argininosuccinate lyase [argH]. 66 517 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Cre11g1877 523 MobiDBLite consensus disorder prediction 43 62 - -
Cre11g1877 523 FunFam Argininosuccinate lyase 66 170 - -
Cre11g1877 523 SUPERFAMILY L-aspartase-like 67 519 IPR008948 GO:0003824(InterPro)
Cre11g1877 523 NCBIfam argininosuccinate lyase 67 515 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Cre11g1877 523 Pfam Lyase 70 364 IPR022761 -
Cre11g1877 523 Gene3D Fumarase/aspartase (Central domain) 183 512 - -
Cre11g1877 523 Pfam Argininosuccinate lyase C-terminal 427 495 IPR029419 -
Cre11g1877 523 CDD Argininosuccinate_lyase 86 515 IPR009049 GO:0004056(InterPro)|GO:0042450(InterPro)
Cre11g1877 523 Gene3D - 424 496 - -
Cre11g1877 523 PRINTS Fumarate lyase superfamily signature 295 322 IPR000362 -
Cre11g1877 523 PRINTS Fumarate lyase superfamily signature 339 355 IPR000362 -
Cre11g1877 523 PRINTS Fumarate lyase superfamily signature 166 184 IPR000362 -
Cre11g1877 523 PRINTS Fumarate lyase superfamily signature 211 229 IPR000362 -
Cre11g1877 523 Gene3D - 86 293 IPR024083 -
Cre11g1877 523 PRINTS Argininosuccinate lyase family signature 165 187 - -
Cre11g1877 523 PRINTS Argininosuccinate lyase family signature 206 226 - -
Cre11g1877 523 PRINTS Argininosuccinate lyase family signature 374 393 - -
Cre11g1877 523 PRINTS Argininosuccinate lyase family signature 339 355 - -
Cre11g1877 523 PRINTS Argininosuccinate lyase family signature 257 273 - -
Cre11g1877 523 PRINTS Argininosuccinate lyase family signature 295 319 - -
Cre11g1877 523 FunFam Argininosuccinate lyase 425 496 - -
Cre11g1877 523 FunFam Argininosuccinate lyase chloroplastic 293 451 - -
Cre11g1877 523 PANTHER ARGININOSUCCINATE LYASE 61 522 IPR009049 GO:0004056(InterPro)|GO:0004056(PANTHER)|GO:0005829(PANTHER)|GO:0042450(InterPro)|GO:0042450(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1877 K01755 - - csv:101205167 986.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1877 Cre-Chr11:30438875 Cre08g1106 Cre-Chr8:24221136 5.10E-231 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54