Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1885 ATGTTTTTGCCTGAATTATCTGCTTTGTTAGACACCCTTGAACAGTCTGCTTGTAATCCGGAGGTTGCCATTGCTCTCTCTAAGAGCCTGCTCCGCATATTACAACTTTCATCTGAGAGAACTGTTGCTTCATTCAAGACACTGAATGTTGTTCCTCGGTTGCTTAAAGTTGCTTGTGTTCAAGCCCAGGAACATAGAAGATCTGGAAATGTTATTTCATCTGAGATTCATAATGTTGAAGACATTCAGTCTCGAAGTAATCAGGGACATGATTCACGGGAGACAGCCCAAAGTTGTCTTTCATGCTTGGAAACCATCATGGAGGTTTTCACAGAATTTTTCTCAATAGGAGACGAAGCTAAAAGTTTGGTTCTCCTTAATTCAACATCAATTGATTGTCTATTTGATTTATTTTGGGAAGAAAGTTTGAGAGGCCGTGTACTTAAACACACACTTGAGCTCATAAAGATAAAACCAATTTCTGAGGAAGATCAAAAGGCGAAATTGTATATTTGTACTAAATATCTTGAAATGTTTGCTCAAATTAAAGAGCGGGAGAAAAGTTCTACGGAGCTCTCTATTGATCTGTTGGTTGGAATCAGAGAGATGGTTCTGAATGATCCTCAGTACTACCAAACTCTGTTCCGTGATGGAGAATGCTTTTTGCATATTGTCTCTTTGTTGAATGGTAATGTCGATGAGGCAAATGGTGAAAAGTTGATTTTGAACGTCCTTCAAACTCTTACTTGTCTGCTAGCTAAAAATGAAGTCTCAAAGGCTTCATTTAGAGCTTTGGCTGGCAAAGGTTACCAGACAATGCAAACTTTGCTTTTGGACTTCTGTCAGTGCCATCCAAGTGATGCACTCTTAACTGCCTTGCTTGATATGCTTGTTGATGGAAATTTTGACTCGAAGTTGTGCCCTATTATACAGAATGAAGACGTGATCATTCTTTATCTGAGTGTTCTGCAGAAGAGCAGTGAGCCACTGCAGCATCAAGGGCTTAATATGTTTCAACAGCTTCTTCGGGATTCTATATCCAATCGAGCGTCTTGTGTGAGAGCAGGAATGCTGACTTTTCTTCTGGATTGGTTTGGTCAAGATAACAACGACGATGTCATTGTGAAAATTGCTCAGTTAATTCAAGTAATAGGGGGGCATAGTGTATCTGGGAAGGATATCCGCAAAATTTTTGCTTTGTTAAGGAGTGAGAAAGTTGGGAAACAGAGACGTTATTGCTCATTGTTGATGGCCAGTATTTTATCAATGCTAACTGAGAAGGGACCAACTGCTTTTTTTGATCTGAGTGGGAACAATTCTGGGATCTTAATTAAAACACCTGTTCAGTGGCCTCTCAATAAAGGATTTTCCTTTTCATGCTGGCTTCGGGTAGAGAACTTTCCAATACATGGAACAATGGGTCTTTTCAGCTTCCTTACTGAAAATGGAAGAGGCTGCTTGGCTGTGCTTGCAAAGAACAAGCTTATTTATGAGTCTATCAATCTGAGGAGACAGAGTGTCAGGTTACATGTTAATGTAGTCAGAAAGAAGTGGCATTTTCTTTGTATAACCCATAGTATTGGAAGAGCATTCTCTGGGGGTAGCTTGTTGAGGTGTTATGTGGACGGTGATCTTGTTTCATCTGAGAGATGCAGATATGCTAAAGTTAATGAACCACTAACAAATTGCACGGTTGGAGCAAAGTTCAATGTGTCTCTGAGTGAAGAAGTTGATACTAAGGAATCTGTTGAAGCTGCATTTCCTTTTCTTGGTCAGATAGGTCCTGTTTATTTGTTTAGTGATACTATTTCTTCTGAGCAAGTGCAGGGTATTCATTCTCTTGGACCAAGCTATATGTATTCATTTCTTGACAATGACATTGCCTCTTTCTCTGAAAATCAATTGCCTAGAGGAATTCTTAATGCTAAAGAGAGTTTGGCATCAAAAATAATCTTCGGCCTTAATGCACAGGCAAGCAGTGGAAAATCATTATTTAATGTTTCACCAACGTTAGATCTCATTTTGGAAAAGAATTCTTTTGAAGCTACTGCTATGGGTGGCACAGAGTTATGCTCAAGACGCTTACTACAGCGGATTATCTACTGTGTTGGGGGTGTCACTGTACTTTTTCCTCTAATTTCTCAGTCTGACAGATATGAAAGTGAAAGTAATGGTCAGGATGTGGATGTAATTGGTACCAAAGAGTGTCTAACAGCTGAAGTTATTGAACTTATTGCTTCTGTCCTTGATGAGAATTTACCAAATCAACATCAGATGCATCTCCTTTCTGGATTCCCCATTCTGGGATTTTTGCTGCAATCGGTCAATCCACAACAACTTAATATGGAAACTCTTGCAGCTTTAAAACATCTTTTCAATGTCATTGCAAACTGTGGATTCTGTGAGCTTCTCATTCAAGATGCTATATCTAGCATATTTCTTAATCTCTCAATCTGGATCTACTCTGCTTATGAGGTGCAGCGTGAATTATACTTGTTTCTGATTCAGCAGTTTGATAATGATCCCAGACTGCTCAAGAATCTTTGCCGCCTTCCACTTATTCTTGATATGATTTGTAAGTTTTACTGTGACAAAGCTAAATGTAAATTTGCTTCTGGAAGCAAGACTTCTCTGCATCCACCTGTTGAAGCTCTTGGAGAAAGACCTACTAAGGATGAAATTCGGAAAATTCGTCTTCTTTTACTAAGCCTTGGGGAAATGAGCATTCGGCAAAATATTGTAGCAGCTGATATAAAAGCTCTTATTGCTTTTTTTGAAAGAAACCAGGATGTGACATGCATCGAGGATGTTTTGCATATGGTTATTCGGGCTATAGCTCAAAAGACAGTTCTTGCTTCTTTCCACGAGCAAGTTAATTTCATCGGTGGCTGTCCAATTTTTGTCAATCTTCTACAAAGGGAATTTGAACCTATCAGATTGCTTAGCTTGCAGTTCCTTGGTAGACTTTTGGTCGGTCTTCCTTCCGAGAAGAAAGGACTGAGATTTTTCAATCTCCCAAGTGGAAAAGCTAAATCTGTTCAAGATAGCAATAAGAAAACTAGTTTAAGGATGCAACCACTATTCTCAGCTATATCTGATAGGTTGTTTAGGTTTCCGCCAACAGACAATTTATGTGCTGCATTGTTTGATGTTCTTCTTGGGGGTGCAAGTCCCAAACAGGTATTGCAGAAACAAAATCAGTCTGATGGACAAAGAAACAAATCTCCTGGATCTCACTTTGCTGTTCCACAGAGTTTAGTGCTTATTTTCCAGTTCCTATGTAGCTGTGAGGATATTTCTGCAAGACTAAAAATAATCACAGATCTTCTTGATCTTCTTGAGACAAATCCTTCGAATATTGAAGCTTTTATGGAATATGGGTGGAATGCTTGGTTGACAGCCTGTGTCAAGCTTGATGCTTTGCAGCAATACAAAGTTGGGTCATTAGATCAAGTTGATGATAAAATAAATGAGCAGCGTATTATAAGGAAACTATTTTCTGTTGTTCTTTTGCATTGCATATGGTCAGTGAAGGGTGGCTGGCAACAATTAGAAGAAACAGCAACTTTCCTTCTTATGCAGTCTGAGAAAGGCCAGGTCTCCTTTAAGTACTTTCTTCGTGATATGTATGAGGATCTTATTCAGATGTTAGTGGATTTATCTTCTGGGGAGAATATATTTGTTGCACAACCATGTCGAGATAATACGTTATACCTTCTAAGGCTTATTGATGACATGTTTATAGCTGAACTTGACCATCAGTTGCCGATTCTAGCGACTGTCTTTGATGTTTCTCTCGACTCCACAGAACTGGAGCTTTACATCTCTGCCTTACATGATGTTTTGCAAGGAGAATCTGATGATGGGACCGCAAGATATTCACAGCATCAAATGGAAGTTAAAGATGACATGATGGATGAAAAGTGGTGGCATCTTTATGATAACTTGTGGATTATTATTAGTGAGATAAATGGCAAGGGACCAAACAAAACTTTGCCGAAATCATCAACATCTGGAGGTCCTACATTTGGTCAAAGAGCCCGTGGATTAGTAGAGTCACTCAACCTTCCTGCTGCAGAGATGGCTGCAGTTGTTGTATCAGGTGGCATAGGCAGTGCATTGGGAGGAAAACCTAACAGAATTGGTGATAAGGCAATGCTTTTGCGCTCGGAGAGGTTCCCGAGAATTATTCTTCGACTTGTGATGCTTTACATTTGCAAGTCTCCTCTTGAAAAAGCATCACGATGTGCACAGCAGTTTATTTCACTTTTACCTTCCCTTGTGGTTACTGATGATGAGCAAAACAAAAATAGGTTGCAGCTGTTCATCTGGTCTTTGCTTGCTGTTAGGTCACAGTACAGAATGTTGAATAATGATGCTCGCATTCATGTCATATCACATTTGATTCGAGGAACTGTAAGCTGTTGCAAATCAATACTTGCAAACAGTATAATCAGCACAGATGATTCCTCAGATACTGGTGTTTTTATTAAAGAAACTGGATACATCCACAACCTGATACAAAAAGAACGAGTTACTGCAGCTATGGCTGATGAAGCAAGCTATATGAAGACATCAAAAATTGACCATGAGAAGCAGTTGCATGAGCTAAGAATCAGAATGGAGGAGAACTTTTCTAATGAGTCTAACAACCAGAAGGTTTTTGAAGATGAGATGCAAAGTAGTCTAGCTTCCATTTTGATAGCAGATGACAATAGAAGGGCTGCATTCCAGCTTTCGTATGAGGACGAGCAGCAAAATATTGCGGAAAAGTGGATGCATATGTTTCGTGCTTTGATTGATGAGCGAGGTCCGTGGTCTGCTAATTCTTCTCCAAATATTTCTTCAACACATTGGAAACTTGACAAGACTGAAGATATGTGGCGACGAAGACCCAAACTAAGAAAGAATTATCACTTCGATGAAAAGCTGTGTCACCCCCCATCAATTTCTCCTGGTGTTGACATTATCAACGCTGAAAATGAAAACAAATCTAGTATTGTTGGGCACATTCCAGAGCAAATGAAAAGATTTTTGCTGAAAGGTGTTCGGAAGATAACTGATGAAGGAAACTCAGAACTCATTGAAAATGATGTTGAACAATGTGAACGTAATGCTTCCAGTCTCAAGGACTCTTCAGATGGTCAGTACCCAGAGCTAATCAAAGACGTTGGTGACTGGAAAGATATTGTACAGGACAGAAAAGATACTTCTTTATTTTCTCCCATGACAGAAGAAAGCGAGGTTCTCATGTCGTCTCCATGCATACTTGTGACACCCAAAAGAAAATTAGCTGGACGTTTGGCTGTAATGAAAAATGTTTTGCATTTCTTTGGGGAATTTTTGGTCGAAGGTACTGGGGGAGCATCTACCTTTAAGAACTTCGAGGTCCTTAAAAGTTCAAATTTGACCAAGCTCAATCAAAGGCAGAAGTCTCTAAAGCCTTTAAATTTACAATTGGATTCCAAAAAGAGTACAGTTGATAACATGGAGGTGATGAATGATGATGGCTATTTAAAAAGACCACTAAAAAATGTCAGACGCCACAGGAGATGGGACATTGGAAAGATAAAAGGGGTTCACTGGACTCGATATTTGCTAAGATACACTGCGATAGAGATCTTCTTCAGTGATTCAGTTGCACCAGTCTTTTTTAATTTTGACTCTCCAAAAGATGCAAAAGATATTGGGACTCTGATCGTGTCTAGTAGAAATGACTATTTGTTTCCTAAAGGAAGTAGTCGAAATCAAAGTGGAGTTATTTCTTTTGTTGATAGACGTGTTGCCCTAGAGATGGCAGAAACTGCTAGAGAGAGTTGGAGGAGGAGGGATATTACAAACTTTGAGTATTTAATGATTCTCAATACTCTTTCTGGAAGATCTTATAATGATTTAACTCAGTATCCAGTCTTTCCCTGGATTTTGGCGGATTACTCCTCCGAGGTTCTTGATTTTAACAAGTCATCAACTTTTCGTGATCTTTCAAAGCCTGTTGGAGCATTAGATCTAAAACGCTTTGAGGTATTTGAAGATAGGTATCGTAACTTTTGTGATCCTGACATACCAAGTTTTTATTATGGATCTCATTACTCAAGCATGGGAATTGTTCTGTACTACCTTCTACGATTGGAGCCATTTACTTCTCTTCACCGGAATTTGCAA 6162 39.16 MFLPELSALLDTLEQSACNPEVAIALSKSLLRILQLSSERTVASFKTLNVVPRLLKVACVQAQEHRRSGNVISSEIHNVEDIQSRSNQGHDSRETAQSCLSCLETIMEVFTEFFSIGDEAKSLVLLNSTSIDCLFDLFWEESLRGRVLKHTLELIKIKPISEEDQKAKLYICTKYLEMFAQIKEREKSSTELSIDLLVGIREMVLNDPQYYQTLFRDGECFLHIVSLLNGNVDEANGEKLILNVLQTLTCLLAKNEVSKASFRALAGKGYQTMQTLLLDFCQCHPSDALLTALLDMLVDGNFDSKLCPIIQNEDVIILYLSVLQKSSEPLQHQGLNMFQQLLRDSISNRASCVRAGMLTFLLDWFGQDNNDDVIVKIAQLIQVIGGHSVSGKDIRKIFALLRSEKVGKQRRYCSLLMASILSMLTEKGPTAFFDLSGNNSGILIKTPVQWPLNKGFSFSCWLRVENFPIHGTMGLFSFLTENGRGCLAVLAKNKLIYESINLRRQSVRLHVNVVRKKWHFLCITHSIGRAFSGGSLLRCYVDGDLVSSERCRYAKVNEPLTNCTVGAKFNVSLSEEVDTKESVEAAFPFLGQIGPVYLFSDTISSEQVQGIHSLGPSYMYSFLDNDIASFSENQLPRGILNAKESLASKIIFGLNAQASSGKSLFNVSPTLDLILEKNSFEATAMGGTELCSRRLLQRIIYCVGGVTVLFPLISQSDRYESESNGQDVDVIGTKECLTAEVIELIASVLDENLPNQHQMHLLSGFPILGFLLQSVNPQQLNMETLAALKHLFNVIANCGFCELLIQDAISSIFLNLSIWIYSAYEVQRELYLFLIQQFDNDPRLLKNLCRLPLILDMICKFYCDKAKCKFASGSKTSLHPPVEALGERPTKDEIRKIRLLLLSLGEMSIRQNIVAADIKALIAFFERNQDVTCIEDVLHMVIRAIAQKTVLASFHEQVNFIGGCPIFVNLLQREFEPIRLLSLQFLGRLLVGLPSEKKGLRFFNLPSGKAKSVQDSNKKTSLRMQPLFSAISDRLFRFPPTDNLCAALFDVLLGGASPKQVLQKQNQSDGQRNKSPGSHFAVPQSLVLIFQFLCSCEDISARLKIITDLLDLLETNPSNIEAFMEYGWNAWLTACVKLDALQQYKVGSLDQVDDKINEQRIIRKLFSVVLLHCIWSVKGGWQQLEETATFLLMQSEKGQVSFKYFLRDMYEDLIQMLVDLSSGENIFVAQPCRDNTLYLLRLIDDMFIAELDHQLPILATVFDVSLDSTELELYISALHDVLQGESDDGTARYSQHQMEVKDDMMDEKWWHLYDNLWIIISEINGKGPNKTLPKSSTSGGPTFGQRARGLVESLNLPAAEMAAVVVSGGIGSALGGKPNRIGDKAMLLRSERFPRIILRLVMLYICKSPLEKASRCAQQFISLLPSLVVTDDEQNKNRLQLFIWSLLAVRSQYRMLNNDARIHVISHLIRGTVSCCKSILANSIISTDDSSDTGVFIKETGYIHNLIQKERVTAAMADEASYMKTSKIDHEKQLHELRIRMEENFSNESNNQKVFEDEMQSSLASILIADDNRRAAFQLSYEDEQQNIAEKWMHMFRALIDERGPWSANSSPNISSTHWKLDKTEDMWRRRPKLRKNYHFDEKLCHPPSISPGVDIINAENENKSSIVGHIPEQMKRFLLKGVRKITDEGNSELIENDVEQCERNASSLKDSSDGQYPELIKDVGDWKDIVQDRKDTSLFSPMTEESEVLMSSPCILVTPKRKLAGRLAVMKNVLHFFGEFLVEGTGGASTFKNFEVLKSSNLTKLNQRQKSLKPLNLQLDSKKSTVDNMEVMNDDGYLKRPLKNVRRHRRWDIGKIKGVHWTRYLLRYTAIEIFFSDSVAPVFFNFDSPKDAKDIGTLIVSSRNDYLFPKGSSRNQSGVISFVDRRVALEMAETARESWRRRDITNFEYLMILNTLSGRSYNDLTQYPVFPWILADYSSEVLDFNKSSTFRDLSKPVGALDLKRFEVFEDRYRNFCDPDIPSFYYGSHYSSMGIVLYYLLRLEPFTSLHRNLQ 2054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30558518 30609788 + CrPI670011_11g018850.1 Cre11g1885 513630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1885 2054 Pfam Concanavalin A-like lectin/glucanases superfamily 437 608 - -
Cre11g1885 2054 Pfam Domain of unknown function (DUF4800) 1543 1642 - -
Cre11g1885 2054 Gene3D - 426 625 - -
Cre11g1885 2054 ProSiteProfiles BEACH-type PH domain profile. 1744 1901 IPR023362 -
Cre11g1885 2054 Gene3D BEACH domain 1929 2054 IPR036372 -
Cre11g1885 2054 Pfam Neurobeachin/BDCP, DUF4704 alpha solenoid region 676 1192 IPR031570 -
Cre11g1885 2054 PANTHER BEIGE/BEACH-RELATED 2 2054 IPR050865 -
Cre11g1885 2054 Pfam PH domain associated with Beige/BEACH 1844 1898 IPR023362 -
Cre11g1885 2054 SUPERFAMILY BEACH domain 1929 2054 IPR036372 -
Cre11g1885 2054 SUPERFAMILY ARM repeat 8 387 IPR016024 -
Cre11g1885 2054 ProSiteProfiles BEACH domain profile. 1925 2054 IPR000409 -
Cre11g1885 2054 SUPERFAMILY Concanavalin A-like lectins/glucanases 428 616 IPR013320 -
Cre11g1885 2054 Pfam Beige/BEACH domain 1939 2054 IPR000409 -
Cre11g1885 2054 Pfam Neurobeachin alpha solenoid region 3 424 IPR046852 -
Cre11g1885 2054 SUPERFAMILY PH domain-like 1748 1902 - -
Cre11g1885 2054 Coils Coil 1692 1712 - -
Cre11g1885 2054 CDD PH_BEACH 1749 1904 IPR023362 -
Cre11g1885 2054 SMART Beach_2 1937 2054 IPR000409 -
Cre11g1885 2054 Gene3D - 1747 1898 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1885 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1139 Cre-Chr2:10337113 Cre11g1885 Cre-Chr11:30558518 1.80E-09 dispersed
Cre09g0699 Cre-Chr9:6725459 Cre11g1885 Cre-Chr11:30558518 4.20E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g530 . Blo12g00736 . Bda03g00451 . Bpe04g00414 . . . . Cma01g01471 . . . . . . . . . . . . . . . . . . . . Cone4ag1289 . . . Lsi04g02285 Csa03g04501 Chy04g00200 . . . . . . . . . . Cmo01g01527 . . . . . . Cpe02g00481 Bhi09g02508 . . . Hepe01g2176 Mch11g0715 . Cla11g01433 Cam11g1487 Cec11g1521 Cco11g1517 Clacu11g1649 Cmu11g1467 Cre11g1885 . . . Cme04g00231
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003187 1 6 2 1 1 0 2 0 2 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 1 1 2 2 1 44