Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g1889 | ATGAAAAACAGTAAATTTTTTCCCTCAATTTTATTTTGCCTTTTCTCTTCTTTTTCCTTTTACTTTTACGCGCCCTTCATTTCTGCAACAACAACAATACCAAAGCCTCCTCGCCAGTTTTCTTCTTCATGGCCGCCGAACGCTGCCTCGCCGGCCGCCGCACCTCCTCCGCTGCAACTACGGATTCACGACCAACATGTTGTGATGGACAATGGTATAATCGGAGTCAACTTGTCGAACCCAATGGGCATGGTCATTGGAATACAGTACAACGGGATTGAAAACTTGCTTGAAGTTGACAATTCTGAAGATGATAGAGGATATTGGGACATCGTTTGGAATGTGGCAGGAAGTTCAGGAACCAAGGGCATTTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATTGTAGAAAATGATGAACAAATTGAACTCTCATTCAGCAGAACTTACAATTCATCCATCGGACGCGACCTCATTCCCTTGAATATCGACAAAAGGTTCGTGATGCTTCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCTGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCTCCGAAAAGACAAGTTTCGTTACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTACCCGACGATCGGAAGCCACCGCGAGGGGAAGCCCTGGCTTATCCGGAGGCCGTCCTTCTTCTCGATCCTATCGAACCAGAGCTCAAGGGAGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGACGCTCGGGTTCACGGGTGGATATCCACCGACCCGCCCATTGGCCTTTGGCAAATCTCACCGACCGAGGAGTTTCGCTCCGGTGGGCCCCTGAAACAGTTTCTCACTTCCCATGTCGGTCCCACAACCCTTACTGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTTGTAAAGTTCGGTGGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCCCTTAGACTCTGGCAAAATGCTAAAGAACAGATGATGACTGAAGTTCAAAGCTGGCCTTACGGTTTCCTTGCTTCTGAGGATTTTCTCAAATCCGATCAACGAGGCACCGTCAGCGGCAGATTGATAATCCGGGAGAGATTTGTGAGTGATGAATCTGTGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACCGAAAGCAAGGGCTACCAATTCTGGACTAGGGCAGATCAGAATGGTTCTTTCTCTTTGAATAATGTTCGCAGTGGAAATTATAGTCTTTATGGATGGGTCCCCAATTTTATCGGCAATTACCAATACAATCATTTCATCACTGTAACCCCAGGCAGTGATATCAATGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTATGTACCGGATCCTAATCCAAAGTATATTAATAAACTTTATGTCAATCATTCAGATAGGTTTAGGCAGTATGGATTATGGGAAAGATACGCAGAGTTATATCCTGATAAGGATCTAGTTTATACAGTCGGGCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCTGGAACTACCTGGAAAGTTAAGTTCCAACTTGACAGTCCAGATACACATGGAACATATAGGCTGCGTCTTGCATTGGCTACTGCACATGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCACTTTCTCCATTATTCACAACTGGATTGATTGGAAGGGACAATACTATAGCTAGACATGGAATCCATGGTCTCTATCGGCTGTACACGGTTGACATTCCGGGCAGTGAGCTTGTGAGCATAAGAGGGTCACTCCTCTCCTATCAGTTCCAACCAGTAGAGATTGACACCTTCCTTGGCTTGGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCTGGGACTCTGGGAACGACAGGAACATTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATGGTGCAAAATGAGGAACAAATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGACAAGTCTGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGCAACTCCTCTGGGTTCTACTCCTATGCCATCTATGAGCACATGAAGGAATGGCCACCATTCAACCTTCCTCAAACAAGGATTGTGTTTAAGCTACGAAAGGACAAGTTTCATTATATGGCCATAGCAGATGACAGACAGAGATTCATGCCACTTCCCGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTATTGCTAGTCAATCCTAAAGAACCTGAATTCAAGGGAGAGGTGGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGCGGACCCCTCAAACAGAACCTTACCTCTCATGTGGGCCCATATACTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAGCTCAGTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGCGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGACGAAGGAAGTTCAAAGCTGGCCCTATTCTTTTCCGGCTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTCCTTGACAGATATGTTAACCAAGAGCAAATGCCGGCTACTGACGCGTATGTGGGACTGGCAGCACCAGGAGATGTTGGATCATGGCAGACCGAAAACAAGGGTTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCATTTAGCATTGAACACGTACGCATCGGCGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGCTATCATTAGTGTATCTGCAGGTAGTGATATGGACATAGGTGATCTTGTTTATGAGCCACCTAGGAACGGGCCCACATTGTGGGAAATAGGCATTCCCGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCTGATCCAAAGTACATAAACAAATTGTATGTCAATCATCCGGATAGATTTAGGCAATATGGACTGTGGGAAAAATATGCAGAGTTATATCCTGATTCAGACTTAGTATATACAGTTGGTGTTAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGAACGAGAAATGATGGATCCCATTTAGCAACCACTTGGGAAATCAAGTTTACGCTTGATAATGTCATAGATAAGAGCGGCACCTATACATTACGAGTGGCTTTGGCCAGTGCCAATGTTGCCGAATTACAGGTAAATAATCCAGAAGCCAAGCCTAGTTTATTTACAACAGGAGTGATTGGGCATGATAATGCAATCGCTAGGCATGGAATTCATGGACTCTATCGACTTTATAGTGTGGACATATTGGGATCTCTCCTGGTGGAAGGAGAGAACACAATCTTCCTTTCACAAATTATAAGCAGTTCATCTTTCAACGGCCTCATGTATGATTATATCCGCCTCGAAGGCCCCCCATCCCACACTTCTACAAATTCATAA | 3909 | 44.1 | MKNSKFFPSILFCLFSSFSFYFYAPFISATTTIPKPPRQFSSSWPPNAASPAAAPPPLQLRIHDQHVVMDNGIIGVNLSNPMGMVIGIQYNGIENLLEVDNSEDDRGYWDIVWNVAGSSGTKGIFDRIEATDFKVIVENDEQIELSFSRTYNSSIGRDLIPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKLRKDKFRYMAVADKRQRFMPLPDDRKPPRGEALAYPEAVLLLDPIEPELKGEVDDKYQYGCESKDARVHGWISTDPPIGLWQISPTEEFRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVVKFGGNEPWKKVFGPIFIHLNSLPEGEDPLRLWQNAKEQMMTEVQSWPYGFLASEDFLKSDQRGTVSGRLIIRERFVSDESVPASGAYVGLALPGELGSWQTESKGYQFWTRADQNGSFSLNNVRSGNYSLYGWVPNFIGNYQYNHFITVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDRFRQYGLWERYAELYPDKDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKVKFQLDSPDTHGTYRLRLALATAHAAELQVRLNDAQALSPLFTTGLIGRDNTIARHGIHGLYRLYTVDIPGSELVSIRGSLLSYQFQPVEIDTFLGLVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTLGTTGTFDEMRGKEFEVMVQNEEQIELSFKRNYSFKDKSVPLNIDKRFIMLRNSSGFYSYAIYEHMKEWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYTLAMFLSAHYSGEDLVLKLSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVNQEQMPATDAYVGLAAPGDVGSWQTENKGYQFWTKTDADGSFSIEHVRIGDYNLYAWVPGFIGDYRYDAIISVSAGSDMDIGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDSDLVYTVGVSDYTKDWFFAHVNRTRNDGSHLATTWEIKFTLDNVIDKSGTYTLRVALASANVAELQVNNPEAKPSLFTTGVIGHDNAIARHGIHGLYRLYSVDILGSLLVEGENTIFLSQIISSSSFNGLMYDYIRLEGPPSHTSTNS | 1302 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30627723 | 30644210 | - | CrPI670011_11g018890.1 | Cre11g1889 | 513634 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g1889 | 1302 | CDD | RGL4_C | 497 | 668 | - | - | |
Cre11g1889 | 1302 | FunFam | Rhamnogalacturonate lyase B | 992 | 1091 | - | - | |
Cre11g1889 | 1302 | Pfam | Rhamnogalacturonate lyase family | 676 | 864 | IPR010325 | - | |
Cre11g1889 | 1302 | Pfam | Rhamnogalacturonate lyase family | 48 | 255 | IPR010325 | - | |
Cre11g1889 | 1302 | CDD | RGL4_M | 995 | 1094 | IPR029413 | - | |
Cre11g1889 | 1302 | Pfam | Polysaccharide lyase family 4, domain II | 409 | 481 | IPR029413 | - | |
Cre11g1889 | 1302 | Pfam | Polysaccharide lyase family 4, domain II | 1019 | 1089 | IPR029413 | - | |
Cre11g1889 | 1302 | SUPERFAMILY | Galactose mutarotase-like | 682 | 955 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cre11g1889 | 1302 | CDD | RGL4_C | 1106 | 1292 | - | - | |
Cre11g1889 | 1302 | CDD | RGL4_N | 679 | 965 | - | - | |
Cre11g1889 | 1302 | SUPERFAMILY | Galactose mutarotase-like | 66 | 346 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cre11g1889 | 1302 | SUPERFAMILY | Galactose-binding domain-like | 492 | 656 | IPR008979 | - | |
Cre11g1889 | 1302 | CDD | RGL4_N | 60 | 346 | - | - | |
Cre11g1889 | 1302 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 674 | 1295 | IPR051850 | - | |
Cre11g1889 | 1302 | Pfam | Polysaccharide lyase family 4, domain III | 495 | 657 | IPR029411 | - | |
Cre11g1889 | 1302 | Pfam | Polysaccharide lyase family 4, domain III | 1104 | 1291 | IPR029411 | - | |
Cre11g1889 | 1302 | SUPERFAMILY | Galactose-binding domain-like | 1101 | 1292 | IPR008979 | - | |
Cre11g1889 | 1302 | SUPERFAMILY | Starch-binding domain-like | 383 | 483 | IPR013784 | GO:0030246(InterPro) | |
Cre11g1889 | 1302 | FunFam | Rhamnogalacturonate lyase B | 383 | 482 | - | - | |
Cre11g1889 | 1302 | SUPERFAMILY | Starch-binding domain-like | 992 | 1091 | IPR013784 | GO:0030246(InterPro) | |
Cre11g1889 | 1302 | CDD | RGL4_M | 386 | 485 | IPR029413 | - | |
Cre11g1889 | 1302 | Gene3D | - | 493 | 680 | - | - | |
Cre11g1889 | 1302 | Gene3D | - | 1102 | 1292 | - | - | |
Cre11g1889 | 1302 | Gene3D | - | 992 | 1091 | - | - | |
Cre11g1889 | 1302 | Gene3D | - | 383 | 483 | - | - | |
Cre11g1889 | 1302 | Gene3D | - | 681 | 935 | IPR014718 | GO:0030246(InterPro) | |
Cre11g1889 | 1302 | Gene3D | - | 60 | 338 | IPR014718 | GO:0030246(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre11g1889 | Cre-Chr11:30627723 | Cre11g1890 | Cre-Chr11:30650641 | 1.30E-267 | tandem | |
Cre11g1889 | Cre-Chr11:30627723 | Cre04g1443 | Cre-Chr4:33256604 | 1.30E-211 | wgd | |
Cre11g1889 | Cre-Chr11:30627723 | Cre08g1094 | Cre-Chr8:24072451 | 4.70E-265 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g1889 | K18195 | - | csv:101204193 | 1232.24 |