Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1889 ATGAAAAACAGTAAATTTTTTCCCTCAATTTTATTTTGCCTTTTCTCTTCTTTTTCCTTTTACTTTTACGCGCCCTTCATTTCTGCAACAACAACAATACCAAAGCCTCCTCGCCAGTTTTCTTCTTCATGGCCGCCGAACGCTGCCTCGCCGGCCGCCGCACCTCCTCCGCTGCAACTACGGATTCACGACCAACATGTTGTGATGGACAATGGTATAATCGGAGTCAACTTGTCGAACCCAATGGGCATGGTCATTGGAATACAGTACAACGGGATTGAAAACTTGCTTGAAGTTGACAATTCTGAAGATGATAGAGGATATTGGGACATCGTTTGGAATGTGGCAGGAAGTTCAGGAACCAAGGGCATTTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATTGTAGAAAATGATGAACAAATTGAACTCTCATTCAGCAGAACTTACAATTCATCCATCGGACGCGACCTCATTCCCTTGAATATCGACAAAAGGTTCGTGATGCTTCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCTGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCTCCGAAAAGACAAGTTTCGTTACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTACCCGACGATCGGAAGCCACCGCGAGGGGAAGCCCTGGCTTATCCGGAGGCCGTCCTTCTTCTCGATCCTATCGAACCAGAGCTCAAGGGAGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGACGCTCGGGTTCACGGGTGGATATCCACCGACCCGCCCATTGGCCTTTGGCAAATCTCACCGACCGAGGAGTTTCGCTCCGGTGGGCCCCTGAAACAGTTTCTCACTTCCCATGTCGGTCCCACAACCCTTACTGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTTGTAAAGTTCGGTGGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCCCTTAGACTCTGGCAAAATGCTAAAGAACAGATGATGACTGAAGTTCAAAGCTGGCCTTACGGTTTCCTTGCTTCTGAGGATTTTCTCAAATCCGATCAACGAGGCACCGTCAGCGGCAGATTGATAATCCGGGAGAGATTTGTGAGTGATGAATCTGTGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACCGAAAGCAAGGGCTACCAATTCTGGACTAGGGCAGATCAGAATGGTTCTTTCTCTTTGAATAATGTTCGCAGTGGAAATTATAGTCTTTATGGATGGGTCCCCAATTTTATCGGCAATTACCAATACAATCATTTCATCACTGTAACCCCAGGCAGTGATATCAATGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTATGTACCGGATCCTAATCCAAAGTATATTAATAAACTTTATGTCAATCATTCAGATAGGTTTAGGCAGTATGGATTATGGGAAAGATACGCAGAGTTATATCCTGATAAGGATCTAGTTTATACAGTCGGGCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCTGGAACTACCTGGAAAGTTAAGTTCCAACTTGACAGTCCAGATACACATGGAACATATAGGCTGCGTCTTGCATTGGCTACTGCACATGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCACTTTCTCCATTATTCACAACTGGATTGATTGGAAGGGACAATACTATAGCTAGACATGGAATCCATGGTCTCTATCGGCTGTACACGGTTGACATTCCGGGCAGTGAGCTTGTGAGCATAAGAGGGTCACTCCTCTCCTATCAGTTCCAACCAGTAGAGATTGACACCTTCCTTGGCTTGGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCTGGGACTCTGGGAACGACAGGAACATTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATGGTGCAAAATGAGGAACAAATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGACAAGTCTGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGCAACTCCTCTGGGTTCTACTCCTATGCCATCTATGAGCACATGAAGGAATGGCCACCATTCAACCTTCCTCAAACAAGGATTGTGTTTAAGCTACGAAAGGACAAGTTTCATTATATGGCCATAGCAGATGACAGACAGAGATTCATGCCACTTCCCGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTATTGCTAGTCAATCCTAAAGAACCTGAATTCAAGGGAGAGGTGGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGCGGACCCCTCAAACAGAACCTTACCTCTCATGTGGGCCCATATACTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTGCTGAAGCTCAGTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGCGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGACGAAGGAAGTTCAAAGCTGGCCCTATTCTTTTCCGGCTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTCCTTGACAGATATGTTAACCAAGAGCAAATGCCGGCTACTGACGCGTATGTGGGACTGGCAGCACCAGGAGATGTTGGATCATGGCAGACCGAAAACAAGGGTTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCATTTAGCATTGAACACGTACGCATCGGCGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGCTATCATTAGTGTATCTGCAGGTAGTGATATGGACATAGGTGATCTTGTTTATGAGCCACCTAGGAACGGGCCCACATTGTGGGAAATAGGCATTCCCGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCTGATCCAAAGTACATAAACAAATTGTATGTCAATCATCCGGATAGATTTAGGCAATATGGACTGTGGGAAAAATATGCAGAGTTATATCCTGATTCAGACTTAGTATATACAGTTGGTGTTAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGAACGAGAAATGATGGATCCCATTTAGCAACCACTTGGGAAATCAAGTTTACGCTTGATAATGTCATAGATAAGAGCGGCACCTATACATTACGAGTGGCTTTGGCCAGTGCCAATGTTGCCGAATTACAGGTAAATAATCCAGAAGCCAAGCCTAGTTTATTTACAACAGGAGTGATTGGGCATGATAATGCAATCGCTAGGCATGGAATTCATGGACTCTATCGACTTTATAGTGTGGACATATTGGGATCTCTCCTGGTGGAAGGAGAGAACACAATCTTCCTTTCACAAATTATAAGCAGTTCATCTTTCAACGGCCTCATGTATGATTATATCCGCCTCGAAGGCCCCCCATCCCACACTTCTACAAATTCATAA 3909 44.1 MKNSKFFPSILFCLFSSFSFYFYAPFISATTTIPKPPRQFSSSWPPNAASPAAAPPPLQLRIHDQHVVMDNGIIGVNLSNPMGMVIGIQYNGIENLLEVDNSEDDRGYWDIVWNVAGSSGTKGIFDRIEATDFKVIVENDEQIELSFSRTYNSSIGRDLIPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKLRKDKFRYMAVADKRQRFMPLPDDRKPPRGEALAYPEAVLLLDPIEPELKGEVDDKYQYGCESKDARVHGWISTDPPIGLWQISPTEEFRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVVKFGGNEPWKKVFGPIFIHLNSLPEGEDPLRLWQNAKEQMMTEVQSWPYGFLASEDFLKSDQRGTVSGRLIIRERFVSDESVPASGAYVGLALPGELGSWQTESKGYQFWTRADQNGSFSLNNVRSGNYSLYGWVPNFIGNYQYNHFITVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDRFRQYGLWERYAELYPDKDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKVKFQLDSPDTHGTYRLRLALATAHAAELQVRLNDAQALSPLFTTGLIGRDNTIARHGIHGLYRLYTVDIPGSELVSIRGSLLSYQFQPVEIDTFLGLVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTLGTTGTFDEMRGKEFEVMVQNEEQIELSFKRNYSFKDKSVPLNIDKRFIMLRNSSGFYSYAIYEHMKEWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYTLAMFLSAHYSGEDLVLKLSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVNQEQMPATDAYVGLAAPGDVGSWQTENKGYQFWTKTDADGSFSIEHVRIGDYNLYAWVPGFIGDYRYDAIISVSAGSDMDIGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDSDLVYTVGVSDYTKDWFFAHVNRTRNDGSHLATTWEIKFTLDNVIDKSGTYTLRVALASANVAELQVNNPEAKPSLFTTGVIGHDNAIARHGIHGLYRLYSVDILGSLLVEGENTIFLSQIISSSSFNGLMYDYIRLEGPPSHTSTNS 1302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30627723 30644210 - CrPI670011_11g018890.1 Cre11g1889 513634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1889 1302 CDD RGL4_C 497 668 - -
Cre11g1889 1302 FunFam Rhamnogalacturonate lyase B 992 1091 - -
Cre11g1889 1302 Pfam Rhamnogalacturonate lyase family 676 864 IPR010325 -
Cre11g1889 1302 Pfam Rhamnogalacturonate lyase family 48 255 IPR010325 -
Cre11g1889 1302 CDD RGL4_M 995 1094 IPR029413 -
Cre11g1889 1302 Pfam Polysaccharide lyase family 4, domain II 409 481 IPR029413 -
Cre11g1889 1302 Pfam Polysaccharide lyase family 4, domain II 1019 1089 IPR029413 -
Cre11g1889 1302 SUPERFAMILY Galactose mutarotase-like 682 955 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cre11g1889 1302 CDD RGL4_C 1106 1292 - -
Cre11g1889 1302 CDD RGL4_N 679 965 - -
Cre11g1889 1302 SUPERFAMILY Galactose mutarotase-like 66 346 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cre11g1889 1302 SUPERFAMILY Galactose-binding domain-like 492 656 IPR008979 -
Cre11g1889 1302 CDD RGL4_N 60 346 - -
Cre11g1889 1302 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 674 1295 IPR051850 -
Cre11g1889 1302 Pfam Polysaccharide lyase family 4, domain III 495 657 IPR029411 -
Cre11g1889 1302 Pfam Polysaccharide lyase family 4, domain III 1104 1291 IPR029411 -
Cre11g1889 1302 SUPERFAMILY Galactose-binding domain-like 1101 1292 IPR008979 -
Cre11g1889 1302 SUPERFAMILY Starch-binding domain-like 383 483 IPR013784 GO:0030246(InterPro)
Cre11g1889 1302 FunFam Rhamnogalacturonate lyase B 383 482 - -
Cre11g1889 1302 SUPERFAMILY Starch-binding domain-like 992 1091 IPR013784 GO:0030246(InterPro)
Cre11g1889 1302 CDD RGL4_M 386 485 IPR029413 -
Cre11g1889 1302 Gene3D - 493 680 - -
Cre11g1889 1302 Gene3D - 1102 1292 - -
Cre11g1889 1302 Gene3D - 992 1091 - -
Cre11g1889 1302 Gene3D - 383 483 - -
Cre11g1889 1302 Gene3D - 681 935 IPR014718 GO:0030246(InterPro)
Cre11g1889 1302 Gene3D - 60 338 IPR014718 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1889 Cre-Chr11:30627723 Cre11g1890 Cre-Chr11:30650641 1.30E-267 tandem
Cre11g1889 Cre-Chr11:30627723 Cre04g1443 Cre-Chr4:33256604 1.30E-211 wgd
Cre11g1889 Cre-Chr11:30627723 Cre08g1094 Cre-Chr8:24072451 4.70E-265 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1889 K18195 - csv:101204193 1232.24