Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1890 ATGTCATTCAGATCAGGCGTCCGATTGCAGATACGAGATCATCATGTGGTAGTGGATAATGGAATACTGCAACTAACCTTATCAAAACCTGATGGAATTATCACTGGCATACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTTAACCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGGAGCAAGGGAATATTTGATGTGATTAAAGGGTCGAATTTTAGGGTTGTAGTGGAAAATGAGGAACAGGTCGAACTGTCTTTTACGAGGATGTGGGATCCCTCCCTCGAGGGCAAGTTCGTTCCTTTAAATATTGACAAAAGGTTCATAGTACTACGCGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAACACTTGAAGGATTGGCCTGATTTTGATATTGGCGAAACCAGGATCACTTTTAAACTTAGAAAAGACAAGTTCCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCTCTGCCCGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTACCCTGAAGCTGTCTTGCTGACTAATCCCAAGAACCCTGAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACATAGACTTAAAGGTTCATGGATGGATATGCACCAATCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTCCGGTCAGGGGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTATATTTCTCAGTACTCATTATGCGGGACAAGATTTAGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATCTCAATTCCACCTCAGTTGGAGATGATCCGTTTTGGTTATGGGAGGATGCTAAAATTCAGATGATGGCGGAAGTCGAAAGTTGGCCTTATAGTTTCCCTGCATCTGAGGATTTCCCGAAAGTAGATCAACGGGGTATTGTTAGTGGTCGGCTACTGGTTTTTGACAGGTATGTGAGTCAAGACTATCTTCCGGCCAGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGTGGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACATACACACTGGCTACTACAATTTATATGCATGGGTCCCTGGCTTCGTTGGAGATTACCGTTGTGACGCCCTCATCAACGTAAACCAAGGATCTTGTATTGAAATGGGCGATCTTGTATATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGCTCTGCGTCTGAGTTCTATGTTCCTGATCCTAATCCAATTCATATTAATAAGCTCTTTGTCAACCATCCTGACAGGTTCCGGCACTACGGGTTGTGGGACAGATATGCTGAATTATATCCGGACGAGGATTTAGTATACACTGTTGGTACAAGTGACTATACCAAAGATTGGTTCTTTGCTCAGGTTCCTAGGAAGAAAAACAGTAATTCACATGAAGGAAGTACTTGGCAAATCAAATTCAAACTTGATAGAGTGGATCACAAGAATATGTATACACTACGGGTTGCAATTGCATCTGCTACTCTTGCTGAATTGCAGGTCCGGGTAAATGATCCGAGATCGAAGCGACCTTTGTTCACGAGCGGATTGATAGGGAGAGACAATGCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGGCATAGCGGGCTGTCATCTTGTTGAAGGAGATAACATAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACAAAGTGA 1908 44.18 MSFRSGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGIFDVIKGSNFRVVVENEEQVELSFTRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTLAYPEAVLLTNPKNPELKGEVDDKYQYSCENIDLKVHGWICTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMMAEVESWPYSFPASEDFPKVDQRGIVSGRLLVFDRYVSQDYLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDGGYFTINHIHTGYYNLYAWVPGFVGDYRCDALINVNQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVNHPDRFRHYGLWDRYAELYPDEDLVYTVGTSDYTKDWFFAQVPRKKNSNSHEGSTWQIKFKLDRVDHKNMYTLRVAIASATLAELQVRVNDPRSKRPLFTSGLIGRDNAIARHGIHGIYWLYSVGIAGCHLVEGDNIIFLTQPRCTSPFQGIMYDYIRLEGPPTK 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30650641 30657533 - CrPI670011_11g018900.1 Cre11g1890 513635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1890 635 CDD RGL4_C 443 630 - -
Cre11g1890 635 CDD RGL4_N 15 294 - -
Cre11g1890 635 FunFam Rhamnogalacturonate lyase B 329 428 - -
Cre11g1890 635 SUPERFAMILY Starch-binding domain-like 332 424 IPR013784 GO:0030246(InterPro)
Cre11g1890 635 SUPERFAMILY Galactose mutarotase-like 13 297 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cre11g1890 635 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
Cre11g1890 635 Gene3D - 8 305 IPR014718 GO:0030246(InterPro)
Cre11g1890 635 SUPERFAMILY Galactose-binding domain-like 438 630 IPR008979 -
Cre11g1890 635 Pfam Polysaccharide lyase family 4, domain II 355 426 IPR029413 -
Cre11g1890 635 CDD RGL4_M 332 431 IPR029413 -
Cre11g1890 635 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 5 633 IPR051850 -
Cre11g1890 635 Pfam Rhamnogalacturonate lyase family 5 201 IPR010325 -
Cre11g1890 635 Gene3D - 439 630 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1443 Cre-Chr4:33256604 Cre11g1890 Cre-Chr11:30650641 1.60E-224 dispersed
Cre04g1806 Cre-Chr4:35926737 Cre11g1890 Cre-Chr11:30650641 1.10E-198 dispersed
Cre08g1094 Cre-Chr8:24072451 Cre11g1890 Cre-Chr11:30650641 1.20E-282 dispersed
Cre10g0920 Cre-Chr10:10884813 Cre11g1890 Cre-Chr11:30650641 1.50E-230 dispersed
Cre11g1889 Cre-Chr11:30627723 Cre11g1890 Cre-Chr11:30650641 1.30E-267 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1890 K18195 - csv:101203947 1266.52