Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1900 ATGGTTCAACGTCCGCCCCTTCACAAGGATCGATCGCAGCCGCGGCCGCCAATGCCATGCCGTCCGTTCACCAAATTCCAAAGCTCCCAGAAATTTATGCTAATTCCAATGCCAATTTTAGATCCTCTATCTCTCTTTGGTTCCTTTGGGAGGGCTGAATCCACGCGCTCCTTGCTGCGCGCGGGCTTTAACGACTCTGTTTCCTTTCGGTTGCTTCTAAACGTGTCAAAGCAATTTGCTACCAATACACGACTCTCTTCGCTTCCTCCTCCACTTAGAGCCTTTTCGCGACCTTCTTCTTCTGTTGTTTGCTCTTCTTCTCGCTTTTCAGATATGGACGCTTCAGGGGGTGTAAGTTTGTATCCTTCGCACCGTACTAAAACTATTCATCTGGTGAGGCATGCCCAGGGATTTCATAATGTGGCAGGAGAGAAGGACGTGAATGAATATCTATCTTTTGATTACTTTGATGCTCAACTTACCTCTTTAGGATGGAAACAGGTTGGCAATCTGCGGAAACATGTACAAGCATGTGGACTTTCTAAGAGAATTGAGTTAGTTATCACTTCCCCATTGTTCAGGACCATGGAAACCGCGGTTGGAACATTCGGTGGTGAAGGTTATTCGGATGGTACAAATGTTCCTCCATTAATGGTAGCAAATGCAGGAGATTGCAACCGCCCTGCAATTTCAAGTTTGAATTGCCCGCCATTTGTGGCAGTAGAGCTTTGTCGGGAACATTTGGGCGTTCATCCTTGTGACAAGAGGCGAAGTATTAGTGAGTATCGGTCTCTTTTCCCTGCGATTGATTTTTCAATGATTGAACATGATGAAGATACCCTGTGGAAGCCAGACATCAGAGAGACCAACGATGAAGTAGCAGAGAGGGGACTGAAGTTTCTTAAATGGCTCTGGACCCGGAAGGAAAAGGAGATCGCAGTTGTCAGCCACAGTGGATTCTTATTTCATGCGTTGAGTGCATTTGGAAATGACTGTCGTCCGTTTATAAAGGATGAAATCTGCAAACATTTTGCCAATTGTGAGCTTCGTTCCTTCGTTCTTGTTGATAGGAGCATGAGCGGGTCAGAATCCTCAACGACCAATTTCCCGGGCGGATTACCGAAAGGGATTGATCTTCCCAGTGATGTTGCAGCTGAAAAGCATCCGGAGAAGGGAGTTCCAAATGAAGACGTGGCTTGA 1200 46.42 MVQRPPLHKDRSQPRPPMPCRPFTKFQSSQKFMLIPMPILDPLSLFGSFGRAESTRSLLRAGFNDSVSFRLLLNVSKQFATNTRLSSLPPPLRAFSRPSSSVVCSSSRFSDMDASGGVSLYPSHRTKTIHLVRHAQGFHNVAGEKDVNEYLSFDYFDAQLTSLGWKQVGNLRKHVQACGLSKRIELVITSPLFRTMETAVGTFGGEGYSDGTNVPPLMVANAGDCNRPAISSLNCPPFVAVELCREHLGVHPCDKRRSISEYRSLFPAIDFSMIEHDEDTLWKPDIRETNDEVAERGLKFLKWLWTRKEKEIAVVSHSGFLFHALSAFGNDCRPFIKDEICKHFANCELRSFVLVDRSMSGSESSTTNFPGGLPKGIDLPSDVAAEKHPEKGVPNEDVA 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30742486 30747248 - CrPI670011_11g019000.1 Cre11g1900 513645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1900 399 SMART PGAM_5 128 324 IPR013078 -
Cre11g1900 399 MobiDBLite consensus disorder prediction 1 15 - -
Cre11g1900 399 MobiDBLite consensus disorder prediction 1 20 - -
Cre11g1900 399 Gene3D - 121 387 IPR029033 -
Cre11g1900 399 MobiDBLite consensus disorder prediction 360 399 - -
Cre11g1900 399 SUPERFAMILY Phosphoglycerate mutase-like 126 357 IPR029033 -
Cre11g1900 399 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 123 354 IPR050275 GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cre11g1900 399 MobiDBLite consensus disorder prediction 381 399 - -
Cre11g1900 399 FunFam Phosphoglycerate mutase-like protein 1 123 370 - -
Cre11g1900 399 CDD HP_PGM_like 128 199 IPR013078 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1900 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1138 Cre-Chr10:23473545 Cre11g1900 Cre-Chr11:30742486 1.90E-118 dispersed
Cre11g1899 Cre-Chr11:30732161 Cre11g1900 Cre-Chr11:30742486 3.80E-104 tandem
Cre11g1900 Cre-Chr11:30742486 Cre11g1901 Cre-Chr11:30750320 9.00E-143 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g558 . . . . Bpe02g00151 . . Bma01g02575 . . . Cma09g00605 . . . Cpe06g00466 . . . . . . . . . . . . . . . Cone4ag1277 Cone7ag0874 . . Lsi04g02298 Csa03g04517 Chy04g00186 . . . Bda11g00812 . . Bpe05g00448 . . Sed05g1536 . Cmo09g00593 . . . Car09g00537 . . Bhi09g02533 Tan01g3880 Cmetu04g2852 . Hepe01g2188 Mch11g0734 . Cla11g01447 Cam11g1500 Cec11g1537 Cco11g1533 Clacu11g1664 Cmu11g1480 Cre11g1900 . . . Cme04g00216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113