Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1904 ATGGAGTTGAATGAAAACTATTTGTTAGAGGAAGTTTTAGGTGTGAGAAGAGAAATGAATTGGGAATTAGCAATGTCTATGGAAATGAATGAGTTAATTTGTAGTGCAAATGGGTGGAATTTCGATTGCTCTGATTCTTCAGCAATGGATCAGCACAATCTTAATTATCTTCTCGGTGGGCAAGGTCAGTACTGTTTGCCTACGGCGGCGGGGAGTACCGGCGATTCAATGTTGGAGACTCCGCCGAGTAGTTTTGAGGTTTATAATGGGGAGTATCCGATTACGAGTATGGAAGAGGAGGAACTTGGAATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCTAATTATTGTAAAGTTGAGGCTAATGTTGAATCTCCTATCCCCATTTTCAACACGGGTGGCACGTGCGACGATTTTCCCAAACAAAAAATCGTCAATTACTCGTGTACTAAGAAGCTTCAGGGTCAGCCGTCCAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGTCTCAACGATCGCCTCTCTATGCTCAGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACCGCGATTTTGGCAGATGCAATTGAGTACGTGAAGGAACTGATGGAGAAAATTAAGAAGTTGGAAAGGGAAATTGAAGTGAATAATAATAATAATCCGAATAAGTTGGGGATTATGAGAGATGTGAAACCAAATAATGAATATTTGGTGAGAAATTCACCCAAGTTTAATGTGGAAAGAAGAGAAGATGACACAAGGATTGAGATTTGTTGTGCAGCAAAGCCAGGGTTATTATTGTCAACAGTGCACACTCTTGAAACATTGGGGCTTGATATTCAGCAGTGTGTTATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCTGAGGGAAGCGAGCAGAGAACAATAGTGAGCACTGAAGAAGTAAAGCAAGCATTATTTGAAAATGCTGGCTATGGAGGAAAATGCTTGTAG 996 41.16 MELNENYLLEEVLGVRREMNWELAMSMEMNELICSANGWNFDCSDSSAMDQHNLNYLLGGQGQYCLPTAAGSTGDSMLETPPSSFEVYNGEYPITSMEEEELGILEDEIHNLEVQANYCKVEANVESPIPIFNTGGTCDDFPKQKIVNYSCTKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELMEKIKKLEREIEVNNNNNPNKLGIMRDVKPNNEYLVRNSPKFNVERREDDTRIEICCAAKPGLLLSTVHTLETLGLDIQQCVISCFNDFAIQASCSEGSEQRTIVSTEEVKQALFENAGYGGKCL 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30779070 30781747 + CrPI670011_11g019040.1 Cre11g1904 513649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1904 331 Coils Coil 196 223 - -
Cre11g1904 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983(InterPro)
Cre11g1904 331 Pfam Helix-loop-helix DNA-binding domain 164 206 IPR011598 GO:0046983(InterPro)
Cre11g1904 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 222 IPR036638 GO:0046983(InterPro)
Cre11g1904 331 CDD ACT_UUR-ACR-like 257 320 - -
Cre11g1904 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 138 326 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre11g1904 331 SMART finulus 163 212 IPR011598 GO:0046983(InterPro)
Cre11g1904 331 Coils Coil 95 115 - -
Cre11g1904 331 Pfam Plant bHLH transcription factor, ACT-like domain 249 320 IPR054502 -
Cre11g1904 331 Gene3D - 152 224 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1433 Cre-Chr5:17564623 Cre11g1904 Cre-Chr11:30779070 1.00E-32 dispersed
Cre11g1598 Cre-Chr11:26382814 Cre11g1904 Cre-Chr11:30779070 2.00E-12 dispersed
Cre11g1904 Cre-Chr11:30779070 Cre04g1437 Cre-Chr4:33194742 2.20E-70 wgd
Cre11g1904 Cre-Chr11:30779070 Cre08g1131 Cre-Chr8:24491564 1.40E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54717 PF00010 HLH 5.70E-10 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1904 - - - 0.0