Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g1904 | ATGGAGTTGAATGAAAACTATTTGTTAGAGGAAGTTTTAGGTGTGAGAAGAGAAATGAATTGGGAATTAGCAATGTCTATGGAAATGAATGAGTTAATTTGTAGTGCAAATGGGTGGAATTTCGATTGCTCTGATTCTTCAGCAATGGATCAGCACAATCTTAATTATCTTCTCGGTGGGCAAGGTCAGTACTGTTTGCCTACGGCGGCGGGGAGTACCGGCGATTCAATGTTGGAGACTCCGCCGAGTAGTTTTGAGGTTTATAATGGGGAGTATCCGATTACGAGTATGGAAGAGGAGGAACTTGGAATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCTAATTATTGTAAAGTTGAGGCTAATGTTGAATCTCCTATCCCCATTTTCAACACGGGTGGCACGTGCGACGATTTTCCCAAACAAAAAATCGTCAATTACTCGTGTACTAAGAAGCTTCAGGGTCAGCCGTCCAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGTCTCAACGATCGCCTCTCTATGCTCAGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACCGCGATTTTGGCAGATGCAATTGAGTACGTGAAGGAACTGATGGAGAAAATTAAGAAGTTGGAAAGGGAAATTGAAGTGAATAATAATAATAATCCGAATAAGTTGGGGATTATGAGAGATGTGAAACCAAATAATGAATATTTGGTGAGAAATTCACCCAAGTTTAATGTGGAAAGAAGAGAAGATGACACAAGGATTGAGATTTGTTGTGCAGCAAAGCCAGGGTTATTATTGTCAACAGTGCACACTCTTGAAACATTGGGGCTTGATATTCAGCAGTGTGTTATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCTGAGGGAAGCGAGCAGAGAACAATAGTGAGCACTGAAGAAGTAAAGCAAGCATTATTTGAAAATGCTGGCTATGGAGGAAAATGCTTGTAG | 996 | 41.16 | MELNENYLLEEVLGVRREMNWELAMSMEMNELICSANGWNFDCSDSSAMDQHNLNYLLGGQGQYCLPTAAGSTGDSMLETPPSSFEVYNGEYPITSMEEEELGILEDEIHNLEVQANYCKVEANVESPIPIFNTGGTCDDFPKQKIVNYSCTKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYVKELMEKIKKLEREIEVNNNNNPNKLGIMRDVKPNNEYLVRNSPKFNVERREDDTRIEICCAAKPGLLLSTVHTLETLGLDIQQCVISCFNDFAIQASCSEGSEQRTIVSTEEVKQALFENAGYGGKCL | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 30779070 | 30781747 | + | CrPI670011_11g019040.1 | Cre11g1904 | 513649 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g1904 | 331 | Coils | Coil | 196 | 223 | - | - | |
Cre11g1904 | 331 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 157 | 206 | IPR011598 | GO:0046983(InterPro) | |
Cre11g1904 | 331 | Pfam | Helix-loop-helix DNA-binding domain | 164 | 206 | IPR011598 | GO:0046983(InterPro) | |
Cre11g1904 | 331 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 161 | 222 | IPR036638 | GO:0046983(InterPro) | |
Cre11g1904 | 331 | CDD | ACT_UUR-ACR-like | 257 | 320 | - | - | |
Cre11g1904 | 331 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 138 | 326 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Cre11g1904 | 331 | SMART | finulus | 163 | 212 | IPR011598 | GO:0046983(InterPro) | |
Cre11g1904 | 331 | Coils | Coil | 95 | 115 | - | - | |
Cre11g1904 | 331 | Pfam | Plant bHLH transcription factor, ACT-like domain | 249 | 320 | IPR054502 | - | |
Cre11g1904 | 331 | Gene3D | - | 152 | 224 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g1433 | Cre-Chr5:17564623 | Cre11g1904 | Cre-Chr11:30779070 | 1.00E-32 | dispersed | |
Cre11g1598 | Cre-Chr11:26382814 | Cre11g1904 | Cre-Chr11:30779070 | 2.00E-12 | dispersed | |
Cre11g1904 | Cre-Chr11:30779070 | Cre04g1437 | Cre-Chr4:33194742 | 2.20E-70 | wgd | |
Cre11g1904 | Cre-Chr11:30779070 | Cre08g1131 | Cre-Chr8:24491564 | 1.40E-77 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54717 | PF00010 | HLH | 5.70E-10 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g1904 | - | - | - | 0.0 |