Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1910 ATGTCGTCTCTACATTTTCTCTACTTTTTCTCTCTAATTTCCATCGCCTTTCTCCCTGGAATCAAATCTGACGACGAACGTCAAATCCTAACCAAACTCAAATCCTCACTCCAAAATTCAAACGCCAATGTCTTCCACAACTGGGAATTTCAAAATCCCACCTGCAATTTCACCGGAATCGCTTGTAATTCAGATGGGTTTGTTAAGGAAATTGACCTATCCAAACGGGGTTTATCTGGGATTGTTCCGTTTGATTCCGTTTGCCAATTGCAAGCCTTGGAGAAGTTGGCTCTTCGGTCTAATGCCCTGCACGGTGAAATCACAGAGGGTTTGAATAATTGTGTGAAATTGAAGTATTTGGATCTCAGCAGCAATTCCTTCTCTGGTTCTTTCCCCAACATACATTCTTTGAGTGAATTGGAGTATTTGTATCTGAATGTAAGTGGGATTTCAGGGAAGTTTCCATGGAAATCAGTTGGGAATTTGAGTGGTTTGATTGAGTTGAGTGTTGGGGATAACGCTTTTGAAAACACTACGTTTCCTGTGGAGGTTACTAATTTGAAGAAGCTTAATTGGCTTTACTTGTCAAACTGCAGCTTAACAGGGGAAATTCCAAGGTCTATAGGTAATCTCACACAGCTTCTTAATTTGGAATTTTCGGATAATTATATAACAGGGACTATTCCGCCGGAGATTGCCAACCTGCAGAAGCTATGGCAGTTGGAATTCTACGGTAATCAATTAACGGGGACACTTCCAGTGGGATTAAGAAATCTAACCGGGCTTAAGAATTTTGATGCTTCCTTGAATCAAATTCATGGGGATTTATCAGAGTTGAGGTTTTTGACGAACCTGGTTTCTCTGCAAATGTTTGAAAATCAAATCTCCGGCGAAATTCCGGTGGAGTTTGGTGAATTCAAGTCACTGGTGAATCTCTCCCTTTACAAGAACAAGCTTACAGGGCCTCTTCCGCAATCGATTGGTTCTTGGACGGAGTTTGATTTTATTGATGTATCTGAAAATTTCTTGACGGGGCCGATTCCTCCTGATATGTGCAAGAAGGGGACGATGCAGAAGCTTCTCATTCTTCAGAACAATTTTACCGGTGAAATTCCGGCAACCTACGCTAACTGCTCCACTTTAACCCGATTTAGAGTCAGTCAGAATTCGCTCACCGGAGTCGTTCCGTCTGGAATTTGGGGATTACCGAACGTGAATATAATTGATCTCGCCTCGAATCAGTTGGAAGGTTCAATCACTCCCAACATTGGAAAGGCTGTGGCTCTCTCGGAATTATACATCGGAAATAATCGATTCTCAGGTCGACTGCCAACGGAGATTTCGCAAGCAAAATCTCTCGCTTCGGTTGACCTGAGCAATAATCAATTCACCGATGAACTTCCGATGACTATCGGCGACCTGAAGAATCTCGATAGCTTCGAATTGCAGGGGAATAAATTCTCCGGTTCGATTCCAGAGACGATCGGCTTGTGTAATTCCTTGAGCATCATCAATCTGGCGGATAATTTCTTCTCTGGACAAATCCCTTCGTCGCTAGGGTTTCTTCCAGTTCTAAACTCTTTGAATCTCTCCAATAACGGCCTATCGGGTGAAATCCCCTCGACGTTTTCGCATCTGAAATTGAGTTTTCTCGATCTTTCCAACAATCAATTAACCGGTCCAGTACCTCAAGCGCTCTCGAATGGAGCTTACAAAGAAAGCTTTGCCGGAAACCCTGGCCTCTGCAGTGAGGCCGATGACTTTATACGGCGATGTTCACAGAGTTCCGGCGCGTCGAAGGACGTCAAAACATTTGTCATCTGTTTCGCCGTCGGATTAATCCTTCTCAGTGTGACGCTGTGGTGCTTCATAACCTTGAAAAAGAGCAGAAAAGATCGAGATCGATCGCTTAAAGAAGAATCGTGGGACCTAAAATCGTTCCACGTAATGACGTTCACAGAGGACGAGATACTCGATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAACGTTTACAAAGTGACTGTCGGAAACGGAAAAGAATTCGCCGTGAAGCACATTTGGAACACTAATCCGTACGAAGGGAAGAAGAAGAATTACCGTAGTTCATCGCCGATTCTGGTGAAACAGAGAACGAAGTCATCGGAATTTGAGTCGGAAGTGAAGACTCTAAGCTCGATCCGCCACGTGAACGTGGTGAAGCTGTACTGCAGCATCACGAGCGAGGTTTCAAGCCTGTTGGTGTACGAATACATGCCGAATGGAAGCTTATGGGACAGACTTCACACGTCGAGAAAAATGGAGTTGGATTGGGAAACAAGATACGAAATCGCCGTGGGAGCGGCGAAGGGACTGGAGTATCTTCATCACGGTTGTGACCGGCCGGTGATCCACCGGGATGTTAAGTCGAGTAACATACTTTTGGATGAATTTCTGAAGCCGAGAATCGCGGATTTTGGGCTTGCCAAAATTCTTCACACAACTGGGTTCAACGAGACCACCCATGTCATTGCCGGCACCCCGGGCTACATCGCACCAGAGTATGGATACACTTACAAAGTCGATGAGAAGAGCGACGTGTACAGTTTTGGAGTGGTATTGATGGAGTTAGTGAGTGGGAAAAAGGCAATAGAGGCCGAGTTTGGAGAGAACAAGGAGATTGTACAATGGGTATCAAACAATTTGAAGACAAGAGAAAGTGTATTAAGCTTAGTAGATTCAAGAATTCCAGATGTATTTAAAGAGGATGCAATAAAGGTATTAAGAATTGCAATTTTGTGCACAGCAAGACTTCCCACTTTGAGACCCACCATGAGAAGTGTCGTTCAAATGCTCGAAGAAGCTCAACCTTGTCGCTTGCTTGGGATTCTCATTACCAAAGATGGTGGGACTGTTAAAAAGGAATTATCTTTGGATGTCAATAAAATTAGTCTCTAA 2949 43.98 MSSLHFLYFFSLISIAFLPGIKSDDERQILTKLKSSLQNSNANVFHNWEFQNPTCNFTGIACNSDGFVKEIDLSKRGLSGIVPFDSVCQLQALEKLALRSNALHGEITEGLNNCVKLKYLDLSSNSFSGSFPNIHSLSELEYLYLNVSGISGKFPWKSVGNLSGLIELSVGDNAFENTTFPVEVTNLKKLNWLYLSNCSLTGEIPRSIGNLTQLLNLEFSDNYITGTIPPEIANLQKLWQLEFYGNQLTGTLPVGLRNLTGLKNFDASLNQIHGDLSELRFLTNLVSLQMFENQISGEIPVEFGEFKSLVNLSLYKNKLTGPLPQSIGSWTEFDFIDVSENFLTGPIPPDMCKKGTMQKLLILQNNFTGEIPATYANCSTLTRFRVSQNSLTGVVPSGIWGLPNVNIIDLASNQLEGSITPNIGKAVALSELYIGNNRFSGRLPTEISQAKSLASVDLSNNQFTDELPMTIGDLKNLDSFELQGNKFSGSIPETIGLCNSLSIINLADNFFSGQIPSSLGFLPVLNSLNLSNNGLSGEIPSTFSHLKLSFLDLSNNQLTGPVPQALSNGAYKESFAGNPGLCSEADDFIRRCSQSSGASKDVKTFVICFAVGLILLSVTLWCFITLKKSRKDRDRSLKEESWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVGNGKEFAVKHIWNTNPYEGKKKNYRSSSPILVKQRTKSSEFESEVKTLSSIRHVNVVKLYCSITSEVSSLLVYEYMPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKILHTTGFNETTHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLMELVSGKKAIEAEFGENKEIVQWVSNNLKTRESVLSLVDSRIPDVFKEDAIKVLRIAILCTARLPTLRPTMRSVVQMLEEAQPCRLLGILITKDGGTVKKELSLDVNKISL 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30867215 30870872 + CrPI670011_11g019100.1 Cre11g1910 513655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1910 982 Gene3D Transferase(Phosphotransferase) domain 1 756 956 - -
Cre11g1910 982 FunFam Leucine-rich receptor-like protein kinase family protein 183 278 - -
Cre11g1910 982 SUPERFAMILY L domain-like 47 366 - -
Cre11g1910 982 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 952 IPR050647 -
Cre11g1910 982 ProSiteProfiles Leucine-rich repeat profile. 116 138 IPR001611 GO:0005515(InterPro)
Cre11g1910 982 SMART serkin_6 661 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1910 982 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524(InterPro)
Cre11g1910 982 FunFam Receptor-like protein kinase HAIKU2 644 755 - -
Cre11g1910 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1910 982 FunFam Probable inactive receptor kinase RLK902 23 182 - -
Cre11g1910 982 Gene3D Ribonuclease Inhibitor 180 279 IPR032675 -
Cre11g1910 982 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cre11g1910 982 FunFam Receptor-like protein kinase HSL1 284 591 - -
Cre11g1910 982 Gene3D Phosphorylase Kinase; domain 1 644 755 - -
Cre11g1910 982 ProSiteProfiles Protein kinase domain profile. 661 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1910 982 Pfam Leucine Rich Repeat 116 133 IPR001611 GO:0005515(InterPro)
Cre11g1910 982 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515(InterPro)
Cre11g1910 982 Pfam Leucine Rich Repeat 500 522 IPR001611 GO:0005515(InterPro)
Cre11g1910 982 Pfam Leucine Rich Repeat 547 568 IPR001611 GO:0005515(InterPro)
Cre11g1910 982 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515(InterPro)
Cre11g1910 982 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515(InterPro)
Cre11g1910 982 Pfam Leucine Rich Repeat 452 474 IPR001611 GO:0005515(InterPro)
Cre11g1910 982 Gene3D Ribonuclease Inhibitor 353 468 IPR032675 -
Cre11g1910 982 Pfam Protein kinase domain 663 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1910 982 SUPERFAMILY RNI-like 322 568 - -
Cre11g1910 982 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 756 959 - -
Cre11g1910 982 SUPERFAMILY Protein kinase-like (PK-like) 651 950 IPR011009 -
Cre11g1910 982 Gene3D Ribonuclease Inhibitor 23 179 IPR032675 -
Cre11g1910 982 Gene3D Ribonuclease Inhibitor 469 592 IPR032675 -
Cre11g1910 982 Gene3D Ribonuclease Inhibitor 280 352 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0980 Cre-Chr10:14300229 Cre11g1910 Cre-Chr11:30867215 2.00E-74 dispersed
Cre10g0982 Cre-Chr10:14495930 Cre11g1910 Cre-Chr11:30867215 1.90E-72 dispersed
Cre11g1910 Cre-Chr11:30867215 Cre07g1493 Cre-Chr7:30152885 5.00E-54 dispersed
Cre11g1910 Cre-Chr11:30867215 Cre11g1911 Cre-Chr11:30884701 5.30E-96 tandem
Cre02g1074 Cre-Chr2:8909098 Cre11g1910 Cre-Chr11:30867215 5.10E-163 transposed
Cre09g1093 Cre-Chr9:11323980 Cre11g1910 Cre-Chr11:30867215 1.30E-10 transposed
Cre11g1910 Cre-Chr11:30867215 Cre04g1420 Cre-Chr4:32992807 2.10E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64568 PF00069 Pkinase 2.50E-43 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1910 - - - 0.0