Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1911 ATGCCTCTCCCTTTCTACTTCTTCTTTCTTCAATCTTTCCTTTCCCTTGCCATTGGAACTGACCAGTTTCAATTTTTCTCTTTCATGCAAAAGGGTGTCATCGGGAATTCTCTCCCCTCCGATTGGACTGGAAATTCCTTCTGTAATTTCACCGGAGTTAGCTGTAACCAAAAGGGGTTAGTGGTCGGAATTGATCTCTCTGGCAGGGCGGTTTCCGGGAGGTTTCCGGCGGATGTTTGTTCTTATTTGCCGGAGTTGAGAGTGCTGCGGCTTGGACGGAGTGGCTTACGTGGAACCTTTCCACGTGGGATAACCAATTGCTCTGTTTTGGAAGAATTGGATATGAGTTTTCTGTCATTGACGGGGACGTTACCGGATTTCTCGCCGTTGAAAACCTTGAGGATTCTCGACATGTCGTACAATAATTTCACCGGTGAATTCCCCTTGTCGGTTTTCAGTTTAACCAATCTCGAGAGGTTGAATTTCAACGAGGACAACAATTTCAATACGTGGCAGTTGCCGGAGAATGTGTCCGGCTTGACGAAGTTGAAATCCATGGTGTTAACGACTTGTATGCTGGAGGGTCGAATTCCGGCGACGATTGGGAATATGACGGCGCTCGTTGACCTTGAATTAAGCGGCAATTTCCTCACCGGAAAAATCCCAAGAGAAATCGGGAATTTGAAGAATTTGAGACAGTTGGAGCTTTATTACAATTCATTAGTCGGAGAAATTCCAGAGGAACTTGGGAATTTAACAGAGCTCGTGGACTTGGACATGTCAGTCAACAAGTTGACTGGGAAACTTCCAGAGTCGATTTGTCGTCTTCCTAAGCTTGAAGTTCTTCAATTTTACAACAACTCATTAACAGGGGAGATTCCAATTTCAATTTCAAATTCAACGACACTCACTATGTTATCCCTTTACGACAACTACATGACGGGACAAGTTCCAAGTAATTTGGGTCAATTCTCTCCCATGGTGGTTCTCGACTTGTCGGAAAATTATTTCTCCGGTCCTTTACCGACAGATGTCTGTGGAGAAGGTAAATTAATGTATTTCCTTGTGTTGGAAAATAAATTTTCCGGTCAAATCCCACCGTCGTACGGTAAATGCCAATCCCTTTTACGGTTTCGAGTCAGTTCGAATATTTTGGAAGGTCCGGTGCCGGTGGGACTTTTGAGTCTTCCTCATGTTTCGATTATTGATTTCGGTAACAATAATTTGAGTGGCGAAATTCCCAATTCTTTTGTTAAAGCGAGGAATCTTTCGGAATTGTTTATGCAGAGTAATAGAATTTCCGGCGTGTTGCCGCCGGAAATTTCTAAAGCTACCAATTTAGTTAAGATTGATCTTAGCAACAATCTCTTGTCTGGTCCAATTCCTTCCGAAATTGGGAATCTCAGAAAGCTTAATTTGTTGCTTTTGCAAGGAAATCACTTGAATTCTTCAATACCCACCTCGCTTTCTGAGCTTAAATCTCTTAATGTTCTTGATTTATCCGATAATCGATTAACGGGTAACATCCCAGAAAGTCTCTGTGAATTGCTACCGAATTCAATCAATTTCTCAAACAATCAACTCTCTGGTCCAATTCCTCTGTCTTTAATCAAAGGTGGATTAGTGGAAAGCTTTTCCGGCAACCCTGGACTTTGCGTTTCGGTTTATTTAGATTCATCAGATCAGAAATTCCCAATTTGTTCTCAAAATTACAACAAAAAGCGATTGGATTCCATCTGGGCAATCGGAATATCGGCGTTCATAATCTTCATCGGAGCTGCTCTGTATTTAAGACGACGATTCAGCAGAGAAAAATCAATAATGGAACAAGACGAAACACTATCTTCATCGTTCTTCTCATACGATGTGAAAAGTTTCCATCGAATCAGCTTCGACCCAAGAGAGATAATCGAATCAATGGTGGATAAGAACATCGTCGGCCATGGCGGCTCCGGTACGGTGTACAAAATAGAGTTAAGCAGTGGGGAAATAGTAGCCGTTAAAAGGCTGTGGAGTCGAAAGGGGAAAGATACGACGTCGGATCAAGAACAGTTGTATTTGGACAAAGAACTGAAAACAGAGGTGGAAACATTAGGGAGTATAAGGCATAAAAACATAGTGAAATTGTATTGCTATTTCTCAAGCTTGGATTGCAGTTTATTGGTTTATGAGTATATGCCAAATGGGAATTTATGGGATGCTTTGCATAAGGGTTGGATTCATTTGGATTGGCCAACTAGACATCAAATTGCTTTGGGTATAGCCCAAGGCTTGGCTTACCTTCATCATGATTTGTTGCCTTCTATAATCCATAGAGACATTAAAACCACTAATATTCTCTTAGATGTCAATTATCATCCCAAAGTTGCAGATTTTGGTATTGCTAAGGTTTTGCAAGCTAGAACGGGCAAGGATTCTACCACCACCGTCATCGCCGGTACTTATGGCTATCTCGCTCCAGAGTATGCATATTCGTCAAAAGCTACGACAAAGTGCGACGTGTACAGCTTTGGAATCGTGCTGATGGAGTTAATAACAGGAAAGAAACCGGTGGAGGCAGAGTTTGGGGAGAACAAGAACATCATATATTGGGTTTCAAACAAAGTAGACACAAAAGAAGGAGCAATGGAAGTATTAGACAAAAGAGTTTCAGGGTCATTCAAAGATGAGATGATTGAAGTTCTAAGGATTGCAATTCGTTGTACGTACAAGAATCCAGCCCTTAGACCCACCATGAAGGAAGTGGTTCAACTATTGATTGAAGCTGACCCTTGCAAATTCGATTCTCACAACAAATGCCCCAAACACACCACCACCAAAATCAACAACCCATTTGACCTATGA 2844 41.81 MPLPFYFFFLQSFLSLAIGTDQFQFFSFMQKGVIGNSLPSDWTGNSFCNFTGVSCNQKGLVVGIDLSGRAVSGRFPADVCSYLPELRVLRLGRSGLRGTFPRGITNCSVLEELDMSFLSLTGTLPDFSPLKTLRILDMSYNNFTGEFPLSVFSLTNLERLNFNEDNNFNTWQLPENVSGLTKLKSMVLTTCMLEGRIPATIGNMTALVDLELSGNFLTGKIPREIGNLKNLRQLELYYNSLVGEIPEELGNLTELVDLDMSVNKLTGKLPESICRLPKLEVLQFYNNSLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENYFSGPLPTDVCGEGKLMYFLVLENKFSGQIPPSYGKCQSLLRFRVSSNILEGPVPVGLLSLPHVSIIDFGNNNLSGEIPNSFVKARNLSELFMQSNRISGVLPPEISKATNLVKIDLSNNLLSGPIPSEIGNLRKLNLLLLQGNHLNSSIPTSLSELKSLNVLDLSDNRLTGNIPESLCELLPNSINFSNNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDSSDQKFPICSQNYNKKRLDSIWAIGISAFIIFIGAALYLRRRFSREKSIMEQDETLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSGTVYKIELSSGEIVAVKRLWSRKGKDTTSDQEQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARTGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSGSFKDEMIEVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFDSHNKCPKHTTTKINNPFDL 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30884701 30888042 + CrPI670011_11g019110.1 Cre11g1911 513656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1911 947 FunFam Leucine-rich repeat receptor-like protein kinase 170 272 - -
Cre11g1911 947 Gene3D Ribonuclease Inhibitor 263 353 IPR032675 -
Cre11g1911 947 SMART serkin_6 640 926 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1911 947 Gene3D Ribonuclease Inhibitor 354 562 IPR032675 -
Cre11g1911 947 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524(InterPro)
Cre11g1911 947 Gene3D Phosphorylase Kinase; domain 1 623 725 - -
Cre11g1911 947 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515(InterPro)
Cre11g1911 947 SMART LRR_typ_2 83 107 IPR003591 -
Cre11g1911 947 SMART LRR_typ_2 276 300 IPR003591 -
Cre11g1911 947 SMART LRR_typ_2 130 154 IPR003591 -
Cre11g1911 947 SMART LRR_typ_2 228 252 IPR003591 -
Cre11g1911 947 SMART LRR_typ_2 492 516 IPR003591 -
Cre11g1911 947 Pfam Protein kinase domain 643 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1911 947 FunFam receptor protein-tyrosine kinase CEPR1 623 725 - -
Cre11g1911 947 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 38 920 IPR050647 -
Cre11g1911 947 Gene3D Transferase(Phosphotransferase) domain 1 726 938 - -
Cre11g1911 947 Pfam Leucine Rich Repeat 278 299 IPR001611 GO:0005515(InterPro)
Cre11g1911 947 Pfam Leucine Rich Repeat 446 468 IPR001611 GO:0005515(InterPro)
Cre11g1911 947 Pfam Leucine Rich Repeat 133 153 IPR001611 GO:0005515(InterPro)
Cre11g1911 947 Pfam Leucine Rich Repeat 255 276 IPR001611 GO:0005515(InterPro)
Cre11g1911 947 Pfam Leucine Rich Repeat 422 443 IPR001611 GO:0005515(InterPro)
Cre11g1911 947 Pfam Leucine Rich Repeat 494 516 IPR001611 GO:0005515(InterPro)
Cre11g1911 947 Pfam Leucine Rich Repeat 207 228 IPR001611 GO:0005515(InterPro)
Cre11g1911 947 Pfam Leucine Rich Repeat 230 252 IPR001611 GO:0005515(InterPro)
Cre11g1911 947 SUPERFAMILY L domain-like 245 561 - -
Cre11g1911 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1911 947 Gene3D Ribonuclease Inhibitor 24 167 IPR032675 -
Cre11g1911 947 SUPERFAMILY Protein kinase-like (PK-like) 627 919 IPR011009 -
Cre11g1911 947 ProSiteProfiles Protein kinase domain profile. 640 920 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1911 947 FunFam leucine-rich repeat receptor-like protein kinase TDR 726 931 - -
Cre11g1911 947 Gene3D Ribonuclease Inhibitor 168 262 IPR032675 -
Cre11g1911 947 FunFam Receptor protein-tyrosine kinase CEPR1 276 561 - -
Cre11g1911 947 SUPERFAMILY RNI-like 64 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1074 Cre-Chr2:8909098 Cre11g1911 Cre-Chr11:30884701 1.10E-85 dispersed
Cre08g1139 Cre-Chr8:24599080 Cre11g1911 Cre-Chr11:30884701 2.20E-184 dispersed
Cre11g1911 Cre-Chr11:30884701 Cre11g2123 Cre-Chr11:32932392 9.10E-61 dispersed
Cre11g1910 Cre-Chr11:30867215 Cre11g1911 Cre-Chr11:30884701 5.30E-96 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64569 PF00069 Pkinase 1.40E-48 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1911 - - - 0.0