Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1915 ATGGCATCATCTAGTCAAATCGGTCCGCTTCGAGAACCCGACCCGATCCAGTATTACCATTACCCCAGACAGAAATTATGCAAAACGCAAAAAACCTCTGGATTTATTTTATTGGAATTTAAAGTGTTTAGGGATTCCGCACCCTTTTGCACTCCTCGGAGCTCAAACCGGGACAGCATTTCGCCGGAATTTCCATTGAAGGCGGTGGTCGTCAACCTAGAATCACATAATATCCCTACAACTTGTACTTGCTGGTTTTCTAGTACAGGACGCTTCAAAGTTGTCATCGGTTTATTAATTTGGAACAGTTTTTCCCTGTTAGTAGCAGGAATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGAAGCTTTGCCAAGTCTAATGGGAAAGGAAAGTGGCAAAAGTCATCAGGTTCTCGTTCGCAAAATCAATCCTTGAAATTGTCTCCTGGCTATGCTGTCTTTCGTGTGCTCTTTCCTGTTTCCAGAATTGGCAGCCTTGTAGGTAAAGATGGGGATGCTTTATCTAACATTCGGGAAGAAACAGGTGTAGAAATCAGAGTAGAGGACGCTGTTCCTGGATGTGATGAGAGAATAGTAGTAATTGGAGGCTCTAATCAAGAAACTGAAGTGAACACTGAGCAGAAGAGTAAGGAAGACAACAAAAATTCTGAAGTCGAGGAGAATGATGATGATATTGCCAAGTCGAAAAAGAAGGAAGATAAAGATCCTCCTGTGGAAGATGCTAAACAGAAGGAGGTTTCTCATTTGCGAAAAGCCCTCTTTCTTGTTTCTGAGAAAATCTTTGATGAAGAACCGGAGGCAGATGGGACAGATGTTGAAGGTGATAAGACATTTGTCTTAAGATTGCTTGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTAGTCAAACAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCGCTTGCAACGACTAATAATGAGCTAGTCCAGATTAGTGGAGGAATTGATGTGGTGAAGAAAGCTCTTGAACTTGTTTTTCAGCAGCTAATGGAAAATTCACCCAATGATAAAGATCCTGTTGCCTTAAGCAATGCTGCACAGTCATCACATTCTTCTGGACTGTCTCTCTCTAGGGCTCATGAATCTCCTCTGGGTAGTAGTTCTTTTAATACTCATGGAGGCCCTTACTCTGTGCCTCGTGATGTTGGCAATTCTCATTTCAGTGCACCTTCTCTTGCTCCTAAACAGTATGAAAGCAGCATTCCTGGTCGAAGCAAACCTTCTCATGAAATTTTGAGTTATCGTTTATTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGCAGTGGTTAAGACTCTTCAGCAAGACACGGGCTGTGACATCAAAGTTGTTGAAGGTGCCTTGGACTCAGAAGACCGCATTATACTTGTAGCTGGTCCTGCGCATCCAGACGACAGAATATCACCAGTGCAAGACGCTGTTTTTCGTGTTCAGGCCAGGATTGTCAAAGCTGTACCAGAGGGCAAGGAGCAGAACTTGGTAGCTAGGTTTCTTGTTTCCTCCAATCAAATTGGTTGTCTTCTTGGAAAGGGTGGCTCCATCATAGCTGAAATGAGAAAGTCGACTGGTGCATATATTCGTATTTTAGGAAAGGAGCAGATTCCAAAGTGTGCTGGGGAGGATGAAGAAGTGGTTCAGATAAATGGAGAGCCTGAAACAGTTCAAGATGCCATGTTGCAGATTACTACTCGGCTGAGGCATCATTTTTTCCGTGATGCATTTCCATCAGTTAATAGTCATCCGAATCCCGCATTCATAGATAGACTTCCTTCATTTCCTTCATATTTTGGAAGGAGAGAATTATCACCTCCAGGAATTTATTCAAGTTTAGGCCCCTCATTTCACAAGTTTGATGCTCTTGGCATTCCTTCACTTAGTGATTTGCGGGATGATCGACCTCCTTTTCTTCATAGGTCAGGTGCTCCTCTGTTATCTGATAGAAAGCCATGGAACTCTCAGGGATTAGTTGAAGGTGGTGTTGGCTTGTCAGACTTTGCAGGAGCCCATCATAGAAGACTTGCTGGATTTGGAGGAGGAAATAATCCAGCTATTATTACGAGCACCACTGTTGAAGTAGTTGTTCCTCGAAACCTTGTCCCTGTCATTTGTGGAGAAAATGGTGAATGTTTGAAACAGATTCGACAGATTTCTGATGCAAAAATTACAATTACCGAGCCAAAGCAAGGAGAAGTTGAAACTATGATTATAATTTCTGGAACGCCTGAGCAGACCCATGCTGCCCAGAGTCTTATTCAAGCTTTTGTATACGATGACTACTTTCTTATCTCTGGGCTGATTGTTTTGGAGAAAGGATGTTGA 2424 42.9 MASSSQIGPLREPDPIQYYHYPRQKLCKTQKTSGFILLEFKVFRDSAPFCTPRSSNRDSISPEFPLKAVVVNLESHNIPTTCTCWFSSTGRFKVVIGLLIWNSFSLLVAGMSAPLTPSKRSRDRSFAKSNGKGKWQKSSGSRSQNQSLKLSPGYAVFRVLFPVSRIGSLVGKDGDALSNIREETGVEIRVEDAVPGCDERIVVIGGSNQETEVNTEQKSKEDNKNSEVEENDDDIAKSKKKEDKDPPVEDAKQKEVSHLRKALFLVSEKIFDEEPEADGTDVEGDKTFVLRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPPLATTNNELVQISGGIDVVKKALELVFQQLMENSPNDKDPVALSNAAQSSHSSGLSLSRAHESPLGSSSFNTHGGPYSVPRDVGNSHFSAPSLAPKQYESSIPGRSKPSHEILSYRLLCPSERVGNVIGKGGAVVKTLQQDTGCDIKVVEGALDSEDRIILVAGPAHPDDRISPVQDAVFRVQARIVKAVPEGKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQINGEPETVQDAMLQITTRLRHHFFRDAFPSVNSHPNPAFIDRLPSFPSYFGRRELSPPGIYSSLGPSFHKFDALGIPSLSDLRDDRPPFLHRSGAPLLSDRKPWNSQGLVEGGVGLSDFAGAHHRRLAGFGGGNNPAIITSTTVEVVVPRNLVPVICGENGECLKQIRQISDAKITITEPKQGEVETMIIISGTPEQTHAAQSLIQAFVYDDYFLISGLIVLEKGC 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30922465 30927631 - CrPI670011_11g019150.1 Cre11g1915 513660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1915 807 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 280 362 IPR036612 GO:0003723(InterPro)
Cre11g1915 807 CDD KH-I_PEPPER_rpt1_like 445 510 - -
Cre11g1915 807 MobiDBLite consensus disorder prediction 116 147 - -
Cre11g1915 807 MobiDBLite consensus disorder prediction 204 255 - -
Cre11g1915 807 MobiDBLite consensus disorder prediction 367 436 - -
Cre11g1915 807 CDD KH-I_PEPPER_rpt2_like 289 360 - -
Cre11g1915 807 ProSiteProfiles Type-1 KH domain profile. 154 220 - -
Cre11g1915 807 ProSiteProfiles Type-1 KH domain profile. 722 786 - -
Cre11g1915 807 MobiDBLite consensus disorder prediction 214 255 - -
Cre11g1915 807 ProSiteProfiles Type-1 KH domain profile. 442 509 - -
Cre11g1915 807 ProSiteProfiles Type-1 KH domain profile. 527 596 - -
Cre11g1915 807 MobiDBLite consensus disorder prediction 131 147 - -
Cre11g1915 807 Gene3D K Homology domain, type 1 442 520 IPR036612 GO:0003723(InterPro)
Cre11g1915 807 Gene3D K Homology domain, type 1 524 604 IPR036612 GO:0003723(InterPro)
Cre11g1915 807 Gene3D K Homology domain, type 1 285 364 IPR036612 GO:0003723(InterPro)
Cre11g1915 807 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 719 792 IPR036612 GO:0003723(InterPro)
Cre11g1915 807 SMART kh_6 441 521 IPR004087 GO:0003676(InterPro)
Cre11g1915 807 SMART kh_6 286 361 IPR004087 GO:0003676(InterPro)
Cre11g1915 807 SMART kh_6 721 791 IPR004087 GO:0003676(InterPro)
Cre11g1915 807 SMART kh_6 526 601 IPR004087 GO:0003676(InterPro)
Cre11g1915 807 SMART kh_6 153 223 IPR004087 GO:0003676(InterPro)
Cre11g1915 807 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 523 607 IPR036612 GO:0003723(InterPro)
Cre11g1915 807 MobiDBLite consensus disorder prediction 367 405 - -
Cre11g1915 807 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 153 210 IPR036612 GO:0003723(InterPro)
Cre11g1915 807 CDD KH-I_PEPPER_rpt2_like 529 601 - -
Cre11g1915 807 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 715 790 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Cre11g1915 807 Pfam KH domain 445 496 IPR004088 GO:0003723(InterPro)
Cre11g1915 807 Pfam KH domain 290 356 IPR004088 GO:0003723(InterPro)
Cre11g1915 807 Pfam KH domain 530 596 IPR004088 GO:0003723(InterPro)
Cre11g1915 807 Pfam KH domain 724 787 IPR004088 GO:0003723(InterPro)
Cre11g1915 807 Pfam KH domain 157 210 IPR004088 GO:0003723(InterPro)
Cre11g1915 807 Gene3D K Homology domain, type 1 720 795 IPR036612 GO:0003723(InterPro)
Cre11g1915 807 Gene3D K Homology domain, type 1 155 217 IPR036612 GO:0003723(InterPro)
Cre11g1915 807 ProSiteProfiles Type-1 KH domain profile. 287 356 - -
Cre11g1915 807 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 444 519 IPR036612 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1915 K21444 - - csv:101221201 1197.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2077 Cre-Chr4:37992615 Cre11g1915 Cre-Chr11:30922465 3.40E-40 dispersed
Cre05g1090 Cre-Chr5:10223755 Cre11g1915 Cre-Chr11:30922465 1.70E-24 dispersed
Cre06g1026 Cre-Chr6:3931571 Cre11g1915 Cre-Chr11:30922465 4.00E-17 dispersed
Cre09g0152 Cre-Chr9:1754987 Cre11g1915 Cre-Chr11:30922465 7.20E-66 dispersed
Cre11g1604 Cre-Chr11:26624478 Cre11g1915 Cre-Chr11:30922465 3.90E-28 dispersed
Cre11g1915 Cre-Chr11:30922465 Cre01g0647 Cre-Chr1:5898140 2.40E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35