Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1918 ATGAAGCTGCTAGGATGGTGGCTGATGTTGGTAGGTTCGCTCCGATTGGCCTCCGTTTGGTTCGGATTCTTCGACATATGGGCCTTGAGGCTCGCCGTCTTCTCAAACACTACCATCTTGCTGTCTTTTGTGATAGTGACTGAAGTTCATGGAAGGACATTCGGAGTGTGGACTCTCCTAACTTGCACCCTTTGCATTCTCTGTGCATTCAACCTTGAGAATAGGCCCATCTATTTGGCGACATTTTTGTCGTTCATCTATGCTTTGGGGCATTTCTTAACCGAACACTTGATATATGATACCATGTCCATTGCAAATTTGACGACTGTTGGTATCTTTGCGGGTACATCAATAATATGGATGCTGCTCCAGTGGAATGCACACCAAAGAATTCACCCCAAACATTCTTGA 411 45.26 MKLLGWWLMLVGSLRLASVWFGFFDIWALRLAVFSNTTILLSFVIVTEVHGRTFGVWTLLTCTLCILCAFNLENRPIYLATFLSFIYALGHFLTEHLIYDTMSIANLTTVGIFAGTSIIWMLLQWNAHQRIHPKHS 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30943452 30946153 + CrPI670011_11g019180.1 Cre11g1918 513663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1918 136 PANTHER ERGOSTEROL BIOSYNTHETIC PROTEIN 28-RELATED 2 128 IPR005352 GO:0005783(PANTHER)|GO:0016020(InterPro)|GO:0030674(PANTHER)
Cre11g1918 136 Pfam Erg28 like protein 4 119 IPR005352 GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1918 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g585 . . . . . . . Bma01g02566 . . Cma01g01449 . . . . . . . . . . . . . . . . . . . . Cone4ag1260 Cone7ag0883 . . Lsi04g02314 Csa03g04532 Chy04g00171 . . . Bda11g00818 . . . . . Sed12g1375 Cmo01g01502 . . . . . . Cpe02g00500 Bhi09g02550 Tan01g3898 Cmetu04g0667 . . Mch11g0752 . Cla11g01464 Cam11g1516 Cec11g1555 Cco11g1550 Clacu11g1680 Cmu11g1497 Cre11g1918 . . . Cme04g00198
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012719 1 1 0 1 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 26