Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1922 ATGGCGATCGCTGCAGAGAACCAGCCCCATGAGAAGATTACCACTACGGAGGCCTCTGCTGTCGAAAAGAGGAGATGGACGCTTAACGACTTTGACATCGGGAAGCCTCTCGGAAGAGGGAAGTTTGGTCATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCTCTGAAAGTTCTATTCAAGAGCCAGTTACAACAGTCGCAGGTTGAGCACCAGCTTCGTCGGGAAGTTGAAATACAGAGTCATCTTAGACACTCCAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAAAGGATTTATTTGGTATTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAGTACTTCAGTGAGAGACGCGCTGCTACTTACGTCGCGTCATTGGCTCGGGCACTCATATACTGTCATGGAAAACATGTAATACACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCTGACTTTGGATGGTCAGTGCACACGTTCAACCGTAGGCGGACTATGTGTGGAACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATCTGGAGCCTTGGTGTACTTTGCTATGAGTTTCTCTATGGGGTACCTCCATTTGAGGCTAAGGAACACTCTGACACATACAGGAGAATCGTGCAAGTAGATTTGAAGTTTCCTCCAAGACCAATCATTTCTTCAACTGCAAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTGCTCTCAACGTGACTGTGTTCTTGAAACAGCTTTCACCTACTATGGATGTTACCTTTTATTTTGTGGATCTAACGACTTACGTGAGCTTAATCGGTTCAAGGAGAAGAGGAAGATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCAATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAATTTTCCTCAGTTGAAGCCAGAAGAGTTAACAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAACTGGTTTGTTCCATGGTGGGACTAAGTACATGGTTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGAAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGGCTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATTGAGCAGGGACTGTCAGCTACTGAGGTTGCAGCCAGACTTCGTTTAATGTTGTTGAGAACTTTGGGTTAA 1362 45.81 MAIAAENQPHEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQMLVKDCSQRDCVLETAFTYYGCYLLFCGSNDLRELNRFKEKRKMSWQPYVDEHLMCDIGGNRLSAAAIIGQDGTVWAQTPNFPQLKPEELTAIMNDFEQPGSLAPTGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEQGLSATEVAARLRLMLLRTLG 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30977833 30983691 + CrPI670011_11g019220.1 Cre11g1922 513667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1922 453 ProSiteProfiles Protein kinase domain profile. 31 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1922 453 FunFam Aurora kinase A 23 114 - -
Cre11g1922 453 Pfam Protein kinase domain 33 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1922 453 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524(InterPro)
Cre11g1922 453 SMART prof_2 305 435 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 SUPERFAMILY Protein kinase-like (PK-like) 18 272 IPR011009 -
Cre11g1922 453 PRINTS Profilin signature 344 364 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Profilin signature 307 316 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Profilin signature 404 417 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Profilin signature 417 434 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Profilin signature 325 334 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Profilin signature 368 382 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1922 453 SMART serkin_6 31 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1922 453 CDD PROF 306 434 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 Gene3D Dynein light chain 2a, cytoplasmic 303 435 - -
Cre11g1922 453 FunFam Profilin 305 435 - -
Cre11g1922 453 Pfam Profilin 305 435 IPR048278 GO:0003779(InterPro)
Cre11g1922 453 FunFam Serine/threonine-protein kinase ark1 23 280 - -
Cre11g1922 453 Gene3D Transferase(Phosphotransferase) domain 1 115 281 - -
Cre11g1922 453 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Cre11g1922 453 CDD STKc_Aurora 30 270 - -
Cre11g1922 453 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 15 270 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Cre11g1922 453 PRINTS Plant profilin signature 331 344 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Plant profilin signature 356 370 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Plant profilin signature 388 403 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Plant profilin signature 421 434 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Plant profilin signature 375 384 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Plant profilin signature 408 421 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Plant profilin signature 305 318 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 SUPERFAMILY Profilin (actin-binding protein) 306 434 IPR036140 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g0695 Cre-Chr11:4050903 Cre11g1922 Cre-Chr11:30977833 1.60E-56 dispersed
Cre11g0696 Cre-Chr11:4054355 Cre11g1922 Cre-Chr11:30977833 6.90E-60 dispersed
Cre11g0697 Cre-Chr11:4058159 Cre11g1922 Cre-Chr11:30977833 1.60E-27 dispersed
Cre11g1861 Cre-Chr11:30263227 Cre11g1922 Cre-Chr11:30977833 6.10E-31 dispersed
Cre11g1922 Cre-Chr11:30977833 Cre05g0841 Cre-Chr5:7523041 3.50E-34 dispersed
Cre11g1922 Cre-Chr11:30977833 Cre05g0292 Cre-Chr5:2702344 4.00E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64570 PF00069 Pkinase 5.30E-69 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1922 K08850 - csv:101219866 543.502