Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1922 ATGGCGATCGCTGCAGAGAACCAGCCCCATGAGAAGATTACCACTACGGAGGCCTCTGCTGTCGAAAAGAGGAGATGGACGCTTAACGACTTTGACATCGGGAAGCCTCTCGGAAGAGGGAAGTTTGGTCATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCTCTGAAAGTTCTATTCAAGAGCCAGTTACAACAGTCGCAGGTTGAGCACCAGCTTCGTCGGGAAGTTGAAATACAGAGTCATCTTAGACACTCCAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAAAGGATTTATTTGGTATTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAGTACTTCAGTGAGAGACGCGCTGCTACTTACGTCGCGTCATTGGCTCGGGCACTCATATACTGTCATGGAAAACATGTAATACACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCTGACTTTGGATGGTCAGTGCACACGTTCAACCGTAGGCGGACTATGTGTGGAACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATCTGGAGCCTTGGTGTACTTTGCTATGAGTTTCTCTATGGGGTACCTCCATTTGAGGCTAAGGAACACTCTGACACATACAGGAGAATCGTGCAAGTAGATTTGAAGTTTCCTCCAAGACCAATCATTTCTTCAACTGCAAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTGCTCTCAACGTGACTGTGTTCTTGAAACAGCTTTCACCTACTATGGATGTTACCTTTTATTTTGTGGATCTAACGACTTACGTGAGCTTAATCGGTTCAAGGAGAAGAGGAAGATGTCGTGGCAACCGTATGTTGATGAGCACTTGATGTGCGACATTGGAGGCAATCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTCAGACCCCCAATTTTCCTCAGTTGAAGCCAGAAGAGTTAACAGCCATTATGAATGATTTTGAGCAACCTGGATCACTTGCCCCAACTGGTTTGTTCCATGGTGGGACTAAGTACATGGTTATTCAAGGTGAACCCGGTGCTGTCATAAGAGGAAAAAAGGGTGGTGGCGGGATTACTATTAAGAAGACTAATCTGGGCTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATTGAGCAGGGACTGTCAGCTACTGAGGTTGCAGCCAGACTTCGTTTAATGTTGTTGAGAACTTTGGGTTAA 1362 45.81 MAIAAENQPHEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQMLVKDCSQRDCVLETAFTYYGCYLLFCGSNDLRELNRFKEKRKMSWQPYVDEHLMCDIGGNRLSAAAIIGQDGTVWAQTPNFPQLKPEELTAIMNDFEQPGSLAPTGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEQGLSATEVAARLRLMLLRTLG 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30977833 30983691 + CrPI670011_11g019220.1 Cre11g1922 513667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1922 453 ProSiteProfiles Protein kinase domain profile. 31 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1922 453 FunFam Aurora kinase A 23 114 - -
Cre11g1922 453 Pfam Protein kinase domain 33 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1922 453 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524(InterPro)
Cre11g1922 453 SMART prof_2 305 435 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 SUPERFAMILY Protein kinase-like (PK-like) 18 272 IPR011009 -
Cre11g1922 453 PRINTS Profilin signature 344 364 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Profilin signature 307 316 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Profilin signature 404 417 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Profilin signature 417 434 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Profilin signature 325 334 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Profilin signature 368 382 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1922 453 SMART serkin_6 31 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1922 453 CDD PROF 306 434 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 Gene3D Dynein light chain 2a, cytoplasmic 303 435 - -
Cre11g1922 453 FunFam Profilin 305 435 - -
Cre11g1922 453 Pfam Profilin 305 435 IPR048278 GO:0003779(InterPro)
Cre11g1922 453 FunFam Serine/threonine-protein kinase ark1 23 280 - -
Cre11g1922 453 Gene3D Transferase(Phosphotransferase) domain 1 115 281 - -
Cre11g1922 453 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Cre11g1922 453 CDD STKc_Aurora 30 270 - -
Cre11g1922 453 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 15 270 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Cre11g1922 453 PRINTS Plant profilin signature 331 344 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Plant profilin signature 356 370 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Plant profilin signature 388 403 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Plant profilin signature 421 434 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Plant profilin signature 375 384 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Plant profilin signature 408 421 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 PRINTS Plant profilin signature 305 318 IPR005455 GO:0003779(InterPro)
Cre11g1922 453 SUPERFAMILY Profilin (actin-binding protein) 306 434 IPR036140 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1922 K08850 - - csv:101219866 543.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g0695 Cre-Chr11:4050903 Cre11g1922 Cre-Chr11:30977833 1.60E-56 dispersed
Cre11g0696 Cre-Chr11:4054355 Cre11g1922 Cre-Chr11:30977833 6.90E-60 dispersed
Cre11g0697 Cre-Chr11:4058159 Cre11g1922 Cre-Chr11:30977833 1.60E-27 dispersed
Cre11g1861 Cre-Chr11:30263227 Cre11g1922 Cre-Chr11:30977833 6.10E-31 dispersed
Cre11g1922 Cre-Chr11:30977833 Cre05g0841 Cre-Chr5:7523041 3.50E-34 dispersed
Cre11g1922 Cre-Chr11:30977833 Cre05g0292 Cre-Chr5:2702344 4.00E-99 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.3e-215 743.0
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.3e-215 743.0
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.7e-213 738.0
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.7e-213 738.0
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.3e-212 735.7
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.3e-212 734.9
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT2G37620 96.1 3.3e-203 704.5
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT2G37620 96.1 1.3e-186 649.4
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.4e-214 741.5
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 7.0e-214 740.0
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.8e-213 736.5
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 9.5e-211 729.6
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.6e-210 727.6
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.6e-210 727.6
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT5G59370 96.7 2.5e-203 704.9
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT5G59370 97.0 1.6e-186 649.0
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.1e-214 742.7
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 3.2e-214 741.1
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.5e-213 737.6
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 4.3e-211 730.7
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT3G46520 96.9 1.1e-203 706.1
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT3G46520 96.7 4.8e-186 647.5
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.7e-215 744.2
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.1e-214 740.7
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 2.0e-213 738.4
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.0e-212 736.1
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.0e-212 736.1
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 3.0e-212 734.6
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT3G12110 97.2 7.8e-205 709.9
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT3G12110 96.4 5.6e-187 650.6
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 3.1e-209 724.5
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.2e-209 723.8
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.2e-209 723.8
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 2.0e-208 721.8
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.0e-208 721.8
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.3e-207 719.2
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT3G18780 93.1 4.9e-199 690.6
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT3G18780 92.5 4.2e-182 634.4
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 1.1e-209 726.1
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.8e-209 725.3
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.8e-209 725.3
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.8e-209 723.4
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.4e-208 720.7
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.4e-208 720.7
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT1G49240 93.1 4.9e-199 690.6
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT1G49240 92.5 4.2e-182 634.4
Cre02g0410 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.9e-217 749.6
Cre04g1194 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.9e-217 749.6
Cre09g1478 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.2e-214 741.1
Cre10g1871 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 7.0e-214 740.0
Cre04g0915 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.0e-213 738.4
Cre01g0489 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.9e-212 734.2
Cre07g0679 . 1 360 Cytoskeleton Gene Families AT5G09810 96.1 5.6e-203 703.7
Cre02g2324 . 1 332 Cytoskeleton Gene Families AT5G09810 95.8 1.1e-185 646.4
Cre11g0696 . 1 131 Cytoskeleton Gene Families AT2G19760 77.9 3.8e-58 221.1
Cre11g0695 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 9.5e-57 216.5
Cre09g0023 . 249 379 Cytoskeleton Gene Families AT2G19760 72.5 4.0e-55 211.1
Cre07g1699 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 2.0e-54 208.8
Cre11g1922 . 305 435 Cytoskeleton Gene Families AT2G19760 73.3 3.4e-54 208.0
Cre11g0696 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 5.0e-58 220.7
Cre11g0695 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.6e-56 215.7
Cre09g0023 . 249 379 Cytoskeleton Gene Families AT4G29350 73.3 1.5e-54 209.1
Cre07g1699 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 2.2e-53 205.3
Cre11g1922 . 305 435 Cytoskeleton Gene Families AT4G29350 71.0 7.0e-52 200.3
Cre11g0696 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 6.2e-38 153.7
Cre11g0695 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.6e-64 242.3
Cre09g0023 . 249 379 Cytoskeleton Gene Families AT4G29340 73.9 3.3e-57 218.0
Cre11g1922 . 305 435 Cytoskeleton Gene Families AT4G29340 73.1 1.2e-54 209.5
Cre11g0696 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 3.4e-54 208.0
Cre07g1699 . 1 131 Cytoskeleton Gene Families AT4G29340 67.9 5.5e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002459 2 3 1 2 1 1 3 2 2 1 1 1 3 2 2 2 2 4 3 2 2 2 2 2 1 1 2 3 1 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64570 PF00069 Pkinase 5.30E-69 CL0016 Cre PK