Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1931 ATGGAAGGAGCTGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCGCCAACGAAAACCGCCAGTCCTCCGATGCAAATAAAACCACCGTCCTACCACCTTCCGCCACTGCTGACCATTTCATCGTTGAGGACCTCTTAGACTTCTCTAATGACGACGACGTTGTCTTCACCGACGGAACTTTCGACAACCAAACTCCTACCTCTACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTTGAACAACACAACAATGGCCACAACTATAATTTCGCCGACGCTAATTTCTCCACCGACCTTGGTGTGCCGTACGATGACTTGGCGGAGCTCGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCCACGACTTGGAGAAGCTGAGTTTGATATCCGGGATGAATTCCCGGACCGACCATGACGATGACGCCTCAAAAACCTCAGAATTCCAGACCGGATTGAACCGGAACCACTCGTCATCCGCTTTCCGTCCTGAAATGACGGTACCAGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGACACATCCAAACATCGCAAAGAAAACCGCCAAGAAGAAAGAAACCCCAGACGACACCTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGTCCAAAGACGTTATGTAACGCTTGTGGGGTCCGATACAAGTCCGGTCGTCTCGTACCAGAATACCGACCGGCAGCTAGCCCCACGTTTGTACTCACAAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGACGGCAGAAGGAGATGATGAGAGCTCAGCAACAACAACAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAGCACATAGGGCCACTCTACCAATAG 1053 51.09 MEGAEYFQPGFCSQFANENRQSSDANKTTVLPPSATADHFIVEDLLDFSNDDDVVFTDGTFDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNGHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTHDLEKLSLISGMNSRTDHDDDASKTSEFQTGLNRNHSSSAFRPEMTVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTTHPNIAKKTAKKKETPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31087464 31088643 + CrPI670011_11g019310.1 Cre11g1931 513676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1931 350 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g1931 350 Pfam GATA zinc finger 246 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g1931 350 PANTHER GATA TRANSCRIPTION FACTOR 39 312 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cre11g1931 350 Gene3D - 241 325 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre11g1931 350 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g1931 350 FunFam GATA transcription factor 236 322 - -
Cre11g1931 350 PIRSF Txn_fac_GATA_plant 22 336 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cre11g1931 350 SMART GATA_3 240 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g1931 350 CDD ZnF_GATA 245 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g1931 350 MobiDBLite consensus disorder prediction 144 182 - -
Cre11g1931 350 MobiDBLite consensus disorder prediction 155 171 - -
Cre11g1931 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0706 Cre-Chr8:20051121 Cre11g1931 Cre-Chr11:31087464 3.30E-39 dispersed
Cre10g1482 Cre-Chr10:28682723 Cre11g1931 Cre-Chr11:31087464 1.40E-28 dispersed
Cre11g0882 Cre-Chr11:5984170 Cre11g1931 Cre-Chr11:31087464 1.50E-31 dispersed
Cre06g1525 Cre-Chr6:10011978 Cre11g1931 Cre-Chr11:31087464 2.70E-32 transposed
Cre07g1683 Cre-Chr7:32269777 Cre11g1931 Cre-Chr11:31087464 1.70E-67 transposed
Cre09g0006 Cre-Chr9:390164 Cre11g1931 Cre-Chr11:31087464 1.40E-74 transposed
Cre11g1931 Cre-Chr11:31087464 Cre08g1153 Cre-Chr8:24761536 7.70E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54720 PF00320 GATA 3.20E-15 CL0167 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1931 - - - 0.0