Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1931 ATGGAAGGAGCTGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCGCCAACGAAAACCGCCAGTCCTCCGATGCAAATAAAACCACCGTCCTACCACCTTCCGCCACTGCTGACCATTTCATCGTTGAGGACCTCTTAGACTTCTCTAATGACGACGACGTTGTCTTCACCGACGGAACTTTCGACAACCAAACTCCTACCTCTACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTTGAACAACACAACAATGGCCACAACTATAATTTCGCCGACGCTAATTTCTCCACCGACCTTGGTGTGCCGTACGATGACTTGGCGGAGCTCGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCCACCCACGACTTGGAGAAGCTGAGTTTGATATCCGGGATGAATTCCCGGACCGACCATGACGATGACGCCTCAAAAACCTCAGAATTCCAGACCGGATTGAACCGGAACCACTCGTCATCCGCTTTCCGTCCTGAAATGACGGTACCAGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCCCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGACACATCCAAACATCGCAAAGAAAACCGCCAAGAAGAAAGAAACCCCAGACGACACCTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGTCCAAAGACGTTATGTAACGCTTGTGGGGTCCGATACAAGTCCGGTCGTCTCGTACCAGAATACCGACCGGCAGCTAGCCCCACGTTTGTACTCACAAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGACGGCAGAAGGAGATGATGAGAGCTCAGCAACAACAACAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAGCACATAGGGCCACTCTACCAATAG 1053 51.09 MEGAEYFQPGFCSQFANENRQSSDANKTTVLPPSATADHFIVEDLLDFSNDDDVVFTDGTFDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNGHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTHDLEKLSLISGMNSRTDHDDDASKTSEFQTGLNRNHSSSAFRPEMTVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTTHPNIAKKTAKKKETPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31087464 31088643 + CrPI670011_11g019310.1 Cre11g1931 513676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1931 350 ProSitePatterns GATA-type zinc finger domain. 246 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g1931 350 Pfam GATA zinc finger 246 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g1931 350 PANTHER GATA TRANSCRIPTION FACTOR 39 312 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cre11g1931 350 Gene3D - 241 325 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cre11g1931 350 ProSiteProfiles GATA-type zinc finger domain profile. 240 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g1931 350 FunFam GATA transcription factor 236 322 - -
Cre11g1931 350 PIRSF Txn_fac_GATA_plant 22 336 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cre11g1931 350 SMART GATA_3 240 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g1931 350 CDD ZnF_GATA 245 292 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g1931 350 MobiDBLite consensus disorder prediction 144 182 - -
Cre11g1931 350 MobiDBLite consensus disorder prediction 155 171 - -
Cre11g1931 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1931 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0706 Cre-Chr8:20051121 Cre11g1931 Cre-Chr11:31087464 3.30E-39 dispersed
Cre10g1482 Cre-Chr10:28682723 Cre11g1931 Cre-Chr11:31087464 1.40E-28 dispersed
Cre11g0882 Cre-Chr11:5984170 Cre11g1931 Cre-Chr11:31087464 1.50E-31 dispersed
Cre06g1525 Cre-Chr6:10011978 Cre11g1931 Cre-Chr11:31087464 2.70E-32 transposed
Cre07g1683 Cre-Chr7:32269777 Cre11g1931 Cre-Chr11:31087464 1.70E-67 transposed
Cre09g0006 Cre-Chr9:390164 Cre11g1931 Cre-Chr11:31087464 1.40E-74 transposed
Cre11g1931 Cre-Chr11:31087464 Cre08g1153 Cre-Chr8:24761536 7.70E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1153 . 83 349 C2C2-Gata Transcription Factor Family AT5G25830 55.7 9.3e-69 257.7
Cre11g1931 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 1.8e-67 253.4
Cre04g1619 . 108 284 C2C2-Gata Transcription Factor Family AT4G36240 50.3 9.1e-42 167.5
Cre10g0478 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.1 2.7e-139 492.7
Cre09g1243 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 1.0e-135 480.7
Cre10g0478 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 51.0 5.1e-121 431.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54720 PF00320 GATA 3.20E-15 CL0167 Cre TF